1DNK: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891

Search for released structures

NDB ID: PDE005 PDB ID: 1DNK

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	BB_DA304DT305:DA312DT313_CC	-0.661	-0.672	3.234	4.224	1.919	28.579	-1.756	2.228	3.056	3.855	-8.486	28.945
1	6	BB_DA306DC307:DG310DT311_CC	-0.005	-0.37	3.697	0.93	5.928	21.893	-3.333	0.388	3.473	15.243	-2.392	22.691
1	1	BB_DG301DG302:DC315DC316_CC	0.452	-1.716	3.584	1.596	9.818	34.413	-4.248	-0.499	3.015	16.18	-2.63	35.78
1	2	BB_DG302DT303:DA314DC315_CC	-0.229	-0.836	3.383	-1.281	3.693	29.157	-2.454	0.17	3.261	7.293	2.53	29.412
1	3	BB_DT303DA304:DT313DA314_CC	0.317	-0.738	3.295	-0.554	11.656	35.529	-2.653	-0.566	2.913	18.496	0.88	37.337
1	5	BB_DT305DA306:DT311DA312_CC	-0.142	0.132	3.245	0.861	7.202	37.824	-0.69	0.322	3.212	10.986	-1.313	38.488

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.