A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PDE005  PDB ID: 1DNK 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14BB_DA304DT305:DA312DT313_CC-0.661-0.6723.2344.2241.91928.579-1.7562.2283.0563.855-8.48628.945
16BB_DA306DC307:DG310DT311_CC-0.005-0.373.6970.935.92821.893-3.3330.3883.47315.243-2.39222.691
11BB_DG301DG302:DC315DC316_CC0.452-1.7163.5841.5969.81834.413-4.248-0.4993.01516.18-2.6335.78
12BB_DG302DT303:DA314DC315_CC-0.229-0.8363.383-1.2813.69329.157-2.4540.173.2617.2932.5329.412
13BB_DT303DA304:DT313DA314_CC0.317-0.7383.295-0.55411.65635.529-2.653-0.5662.91318.4960.8837.337
15BB_DT305DA306:DT311DA312_CC-0.1420.1323.2450.8617.20237.824-0.690.3223.21210.986-1.31338.488

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.