A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
Search for released structures

NDB ID: AH0008  PDB ID: 1DNT 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_C2:DG19_B0.169-0.045-0.0943.458-14.0152.492
15A_DA5:DT16_B0.1-0.1850.451-0.78-11.47-2.806
17A_DA7:DT14_B-0.012-0.0620.069.952-15.6451.81
18A_DC8:DG13_B0.206-0.114-0.2297.995-12.5160.109
110A_DC10:G11_B0.281-0.0760.0125.4465.33-1.386
13A_DG3:DC18_B-0.085-0.027-0.347-17.842-4.358-1.135
19A_DG9:C12_B-0.169-0.0180.065-0.3040.8774.334
14A_DT4:DA17_B-0.165-0.127-0.054-5.781-10.435-0.387
16A_DT6:DA15_B-0.033-0.1430.3976.409-15.336.112
11A_G1:DC20_B-0.364-0.2030.1751.785-5.32-4.527

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.