1DNT: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

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NDB ID: AH0008 PDB ID: 1DNT

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_C2:DG19_B	0.169	-0.045	-0.094	3.458	-14.015	2.492
1	5	A_DA5:DT16_B	0.1	-0.185	0.451	-0.78	-11.47	-2.806
1	7	A_DA7:DT14_B	-0.012	-0.062	0.06	9.952	-15.645	1.81
1	8	A_DC8:DG13_B	0.206	-0.114	-0.229	7.995	-12.516	0.109
1	10	A_DC10:G11_B	0.281	-0.076	0.012	5.446	5.33	-1.386
1	3	A_DG3:DC18_B	-0.085	-0.027	-0.347	-17.842	-4.358	-1.135
1	9	A_DG9:C12_B	-0.169	-0.018	0.065	-0.304	0.877	4.334
1	4	A_DT4:DA17_B	-0.165	-0.127	-0.054	-5.781	-10.435	-0.387
1	6	A_DT6:DA15_B	-0.033	-0.143	0.397	6.409	-15.33	6.112
1	1	A_G1:DC20_B	-0.364	-0.203	0.175	1.785	-5.32	-4.527

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.