A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: AH0008  PDB ID: 1DNT 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12AA_C2DG3:DC18DG19_BB0.228-1.6653.655.4749.67131.055-4.6660.5763.00717.381-9.83832.938
15AA_DA5DT6:DA15DT16_BB0.944-1.353.1242.0163.24332.883-2.886-1.3363.0315.705-3.54733.098
17AA_DA7DC8:DG13DT14_BB-0.031-1.5693.4810.2756.13131.98-3.8910.1043.13411.001-0.49332.549
18AA_DC8DG9:C12DG13_BB0.149-1.9783.524-3.9414.76926.517-5.426-1.3263.07310.228.44727.217
13AA_DG3DT4:DA17DC18_BB-0.871-1.173.112-2.1719.8330.669-3.6951.2172.67317.9883.97232.241
19AA_DG9DC10:G11C12_BB-0.13-2.0563.271.5341.43530.58-4.1670.5433.1622.717-2.90430.651
14AA_DT4DA5:DT16DA17_BB1.033-1.33.042-0.43420.18424.202-5.405-1.9721.51840.3290.86631.42
16AA_DT6DA7:DT14DA15_BB-0.447-1.1972.9472.20814.03132.16-3.7241.0152.21523.925-3.76535.081
11AA_G1C2:DG19DC20_BB0.855-1.6093.2815.382-1.75939.902-2.131-0.6153.428-2.561-7.83840.285

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.