A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: PD0113  PDB ID: 1DRG 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_DA2:DT19_C0.284-0.550.4029.482-9.81112.611
13B_DA4:DT17_C0.601-0.4220.0438.251-10.511-1.636
14B_DA5:DT16_C0.269-0.2250.51316.933-7.4531.415
111B_DA12:DT9_C-0.098-0.123-0.1212.322-9.797-0.077
113B_DA14:DT7_C0.024-0.243-0.236-8.774-2.728-2.228
15B_DC6:DG15_C0.059-0.1780.226.555-24.521.623
18B_DC9:DG12_C0.121-0.189-0.054-4.576-8.4353.065
115B_DC16:DG5_C-0.47-0.1390.223-10.596-6.972-2.665
19B_DG10:DC11_C-0.168-0.338-0.015-1.6042.717-3.13
114B_DG15:DC6_C0.258-0.3080.04-0.29-4.174-3.941
12B_DT3:DA18_C0.504-0.6540.25-1.114-5.418-0.465
16B_DT7:DA14_C-0.07-0.0730.298-9.921-10.9445.576
17B_DT8:DA13_C-0.109-0.282-0.223-6.742-10.2650.276
110B_DT11:DA10_C-0.281-0.1210.11111.108-0.6726.02
112B_DT13:DA8_C0.309-0.2820.0916.711-0.3624.979
116C_DA1:DT4_C-0.906-0.130.168-13.107-9.089-4.591
117C_DT2:DA3_C-0.128-0.25-0.1716.7712.3511.242

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.