1DRG: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

Search for released structures

NDB ID: PD0113 PDB ID: 1DRG

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_DA2DT3:DA18DT19_CC	-0.76	-0.511	3.422	1.227	-0.6	28.205	-0.902	1.855	3.397	-1.231	-2.516	28.237
1	3	BB_DA4DA5:DT16DT17_CC	0.708	0.016	2.972	-2.099	4.498	27.848	-0.908	-1.888	2.878	9.252	4.319	28.278
1	4	BB_DA5DC6:DG15DT16_CC	0.868	-1.179	3.508	2.802	-1.124	29.012	-2.073	-1.057	3.616	-2.235	-5.574	29.165
1	11	BB_DA12DT13:DA8DT9_CC	0.794	-0.844	3.237	-0.171	3.724	31.973	-2.17	-1.462	3.117	6.733	0.309	32.184
1	13	BB_DA14DG15:DC6DT7_CC	-0.324	-0.64	3.184	-1.221	-1.201	34.893	-0.889	0.358	3.213	-2.001	2.035	34.934
1	5	BB_DC6DT7:DA14DG15_CC	0.128	-0.612	3.6	1.989	9.116	39.631	-1.976	0.054	3.386	13.224	-2.885	40.671
1	8	BB_DC9DG10:DC11DG12_CC	0.25	0.998	3.289	-1.596	4.702	34.803	0.933	-0.659	3.376	7.812	2.652	35.144
1	9	BB_DG10DT11:DA10DC11_CC	-0.16	0.072	3.167	-0.131	6.196	26.952	-1.31	0.305	3.106	13.075	0.276	27.643
1	14	BB_DG15DC16:DG5DC6_CC	-0.073	-0.385	3.706	-3.647	-3.398	32.106	-0.009	-0.599	3.712	-6.099	6.545	32.48
1	2	BB_DT3DA4:DT17DA18_CC	-0.307	1.2	3.24	2.022	0.36	39.933	1.714	0.679	3.232	0.527	-2.958	39.983
1	6	BB_DT7DT8:DA13DA14_CC	-0.073	-0.147	3.027	4.144	0.533	36.694	-0.299	0.632	2.998	0.844	-6.556	36.923
1	7	BB_DT8DC9:DG12DA13_CC	0.014	-0.484	3.23	1.362	8.318	30.184	-2.418	0.224	2.992	15.594	-2.554	31.312
1	10	BB_DT11DA12:DT9DA10_CC	0.526	-0.81	3.457	4.063	3.377	37.537	-1.703	-0.261	3.411	5.216	-6.276	37.894
1	12	BB_DT13DA14:DT7DA8_CC	-0.794	-0.24	3.762	1.697	-9.394	41.293	0.776	1.3	3.694	-13.111	-2.369	42.335
1	15	CC_DA1DT2:DA3DT4_CC	0.105	-0.814	3.025	4.133	1.452	36.378	-1.478	0.356	2.985	2.316	-6.59	36.631

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.