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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID:
PD0113
PDB ID:
1DRG
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
1
BB_DA2DT3:DA18DT19_CC
-0.76
-0.511
3.422
1.227
-0.6
28.205
-0.902
1.855
3.397
-1.231
-2.516
28.237
1
3
BB_DA4DA5:DT16DT17_CC
0.708
0.016
2.972
-2.099
4.498
27.848
-0.908
-1.888
2.878
9.252
4.319
28.278
1
4
BB_DA5DC6:DG15DT16_CC
0.868
-1.179
3.508
2.802
-1.124
29.012
-2.073
-1.057
3.616
-2.235
-5.574
29.165
1
11
BB_DA12DT13:DA8DT9_CC
0.794
-0.844
3.237
-0.171
3.724
31.973
-2.17
-1.462
3.117
6.733
0.309
32.184
1
13
BB_DA14DG15:DC6DT7_CC
-0.324
-0.64
3.184
-1.221
-1.201
34.893
-0.889
0.358
3.213
-2.001
2.035
34.934
1
5
BB_DC6DT7:DA14DG15_CC
0.128
-0.612
3.6
1.989
9.116
39.631
-1.976
0.054
3.386
13.224
-2.885
40.671
1
8
BB_DC9DG10:DC11DG12_CC
0.25
0.998
3.289
-1.596
4.702
34.803
0.933
-0.659
3.376
7.812
2.652
35.144
1
9
BB_DG10DT11:DA10DC11_CC
-0.16
0.072
3.167
-0.131
6.196
26.952
-1.31
0.305
3.106
13.075
0.276
27.643
1
14
BB_DG15DC16:DG5DC6_CC
-0.073
-0.385
3.706
-3.647
-3.398
32.106
-0.009
-0.599
3.712
-6.099
6.545
32.48
1
2
BB_DT3DA4:DT17DA18_CC
-0.307
1.2
3.24
2.022
0.36
39.933
1.714
0.679
3.232
0.527
-2.958
39.983
1
6
BB_DT7DT8:DA13DA14_CC
-0.073
-0.147
3.027
4.144
0.533
36.694
-0.299
0.632
2.998
0.844
-6.556
36.923
1
7
BB_DT8DC9:DG12DA13_CC
0.014
-0.484
3.23
1.362
8.318
30.184
-2.418
0.224
2.992
15.594
-2.554
31.312
1
10
BB_DT11DA12:DT9DA10_CC
0.526
-0.81
3.457
4.063
3.377
37.537
-1.703
-0.261
3.411
5.216
-6.276
37.894
1
12
BB_DT13DA14:DT7DA8_CC
-0.794
-0.24
3.762
1.697
-9.394
41.293
0.776
1.3
3.694
-13.111
-2.369
42.335
1
15
CC_DA1DT2:DA3DT4_CC
0.105
-0.814
3.025
4.133
1.452
36.378
-1.478
0.356
2.985
2.316
-6.59
36.631
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.