1E95: Base Pair Morphology Parameters

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As of 11-Dec-2019 number of released structures: 10507

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NDB ID: 1E95 PDB ID: 1E95

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	10	A_A32:U10_A	-0.13	-0.035	-0.139	-0.817	-2.798	-6.263
1	2	A_C2:G18_A	-0.041	-0.078	-0.072	-1.052	-1.771	-5.575
1	5	A_C5:G15_A	0.01	0.016	-0.167	0.782	-0.455	1.182
1	6	A_C6:G14_A	0.058	-0.086	0.274	-1.011	-8.375	-8.479
1	12	A_C34:G8_A	0.036	-0.023	0.024	1.17	-1.646	-6.765
1	1	A_G1:C19_A	-0.244	0.041	-0.046	2.506	-0.225	3.266
1	3	A_G3:C17_A	-0.001	-0.099	-0.066	2.347	1.176	-7.367
1	4	A_G4:C16_A	0.176	0.064	-0.02	-1.14	-0.585	-2.437
1	8	A_G30:C12_A	0.343	0.052	-0.062	-1.528	-4.633	2.205
1	9	A_G31:C11_A	0.022	-0.007	-0.072	-2.254	-3.229	1.855
1	11	A_G33:C9_A	0.247	-0.147	-0.019	0.797	-5.134	-2.378
1	7	A_U29:A13_A	-1.882	0.194	-0.024	-1.317	-2.392	-28.564

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.