A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 1EFS  PDB ID: 1EFS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_DA2:U15_B0.0310.0-0.093-1.309-7.22-1.841
14A_DA4:U17_B0.043-0.01-0.0935.029-8.387-0.815
17A_DA7:U20_B0.129-0.014-0.131-2.637-11.168-0.368
18A_DA8:U21_B0.0620.055-0.04815.916-8.718-2.7
110A_DA10:U23_B0.015-0.005-0.0845.212-8.598-1.939
112A_DA12:U25_B0.0730.0320.07422.264-15.319-2.131
113A_DA13:U26_B0.1550.0210.08216.222-19.108-2.351
11A_DG1:C14_B-0.275-0.086-0.083-0.46712.584-1.161
13A_DG3:C16_B-0.191-0.0410.2034.743-2.224-0.946
15A_DG5:C18_B-0.212-0.0440.0534.414-1.727-1.77
16A_DG6:C19_B-0.274-0.0530.0967.1270.818-1.317
19A_DG9:C22_B-0.304-0.0750.2126.563-4.284-1.513
111A_DG11:C24_B-0.212-0.0560.1732.168-6.689-1.634

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.