1EFS: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 1EFS PDB ID: 1EFS

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_DA2:U15_B	0.031	0.0	-0.093	-1.309	-7.22	-1.841
1	4	A_DA4:U17_B	0.043	-0.01	-0.093	5.029	-8.387	-0.815
1	7	A_DA7:U20_B	0.129	-0.014	-0.131	-2.637	-11.168	-0.368
1	8	A_DA8:U21_B	0.062	0.055	-0.048	15.916	-8.718	-2.7
1	10	A_DA10:U23_B	0.015	-0.005	-0.084	5.212	-8.598	-1.939
1	12	A_DA12:U25_B	0.073	0.032	0.074	22.264	-15.319	-2.131
1	13	A_DA13:U26_B	0.155	0.021	0.082	16.222	-19.108	-2.351
1	1	A_DG1:C14_B	-0.275	-0.086	-0.083	-0.467	12.584	-1.161
1	3	A_DG3:C16_B	-0.191	-0.041	0.203	4.743	-2.224	-0.946
1	5	A_DG5:C18_B	-0.212	-0.044	0.053	4.414	-1.727	-1.77
1	6	A_DG6:C19_B	-0.274	-0.053	0.096	7.127	0.818	-1.317
1	9	A_DG9:C22_B	-0.304	-0.075	0.212	6.563	-4.284	-1.513
1	11	A_DG11:C24_B	-0.212	-0.056	0.173	2.168	-6.689	-1.634

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.