1EFS: Base Pair Morphology Step Parameters

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NDB ID: 1EFS PDB ID: 1EFS

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	AA_DA2DG3:C16U15_BB	-0.108	-1.68	3.121	-4.906	1.352	29.173	-3.558	-0.77	3.019	2.659	9.647	29.604
1	4	AA_DA4DG5:C18U17_BB	-0.28	-1.599	3.345	-4.838	5.891	29.634	-4.18	-0.412	2.987	11.284	9.267	30.577
1	7	AA_DA7DA8:U21U20_BB	-0.311	-0.856	3.12	-1.81	-5.036	31.072	-0.658	0.244	3.227	-9.314	3.347	31.519
1	8	AA_DA8DG9:C22U21_BB	-0.279	-2.004	3.452	-6.734	9.746	29.649	-5.375	-0.684	2.675	18.159	12.546	31.878
1	10	AA_DA10DG11:C24U23_BB	-0.617	-1.427	3.309	-6.394	5.099	31.671	-3.416	-0.007	3.11	9.153	11.478	32.683
1	12	AA_DA12DA13:U26U25_BB	-0.82	-0.636	3.291	-6.782	5.866	40.115	-1.553	0.421	3.261	8.424	9.741	41.065
1	1	AA_DG1DA2:U15C14_BB	-0.289	-1.926	3.371	-0.123	6.008	34.114	-4.144	0.466	3.0	10.143	0.207	34.624
1	3	AA_DG3DA4:U17C16_BB	-0.294	-1.682	3.209	-0.874	5.978	32.533	-3.9	0.378	2.87	10.556	1.544	33.075
1	5	AA_DG5DG6:C19C18_BB	-0.345	-1.844	3.306	-4.094	0.497	31.015	-3.515	-0.145	3.294	0.924	7.613	31.282
1	6	AA_DG6DA7:U20C19_BB	-0.258	-1.717	3.565	-1.613	5.703	31.378	-4.205	0.163	3.22	10.428	2.949	31.919
1	9	AA_DG9DA10:U23C22_BB	-0.511	-1.608	3.281	-1.614	4.056	33.872	-3.366	0.62	3.094	6.925	2.757	34.144
1	11	AA_DG11DA12:U25C24_BB	-0.093	-1.145	2.873	1.346	2.07	29.977	-2.574	0.419	2.783	3.993	-2.596	30.076

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.