1EFW: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0023 PDB ID: 1EFW

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	26	C_5MU54:A58_C	4.222	-2.074	0.841	-3.383	16.398	-97.157
1	16	C_A3:U70_C	-0.574	0.022	-1.009	-20.974	-10.091	5.646
1	12	C_A14:A21_C	-6.593	-0.693	-0.184	13.328	-6.854	51.427
1	4	C_A41:U29_C	-0.143	-0.28	0.122	1.037	-5.09	-1.48
1	18	C_C5:G68_C	1.312	-0.735	-0.062	2.468	-26.78	5.392
1	11	C_C13:G22_C	1.705	-0.429	-0.835	17.35	-10.385	2.24
1	1	C_C38:C32_C	-3.955	-1.783	-0.452	-2.257	-12.542	-6.682
1	3	C_C40:G30_C	0.246	-0.292	0.225	6.043	-3.397	4.615
1	22	C_C50:G64_C	-0.224	-0.098	0.0	-11.719	-14.197	-0.363
1	14	C_G1:C72_C	1.31	-0.209	-2.101	-27.927	8.583	-6.809
1	15	C_G2:C71_C	1.701	0.097	-1.044	-31.499	8.011	2.424
1	17	C_G4:U69_C	-1.91	-0.303	0.154	7.498	-4.845	13.387
1	19	C_G6:C67_C	-0.864	-0.442	0.944	-5.024	2.173	10.521
1	20	C_G7:C66_C	-0.725	-0.087	0.044	-2.904	-3.909	-2.42
1	8	C_G10:U25_C	-2.189	-0.589	-0.647	-16.218	-11.571	-0.359
1	13	C_G15:C48_C	0.507	4.399	0.175	-1.412	-0.363	146.5
1	28	C_G19:C56_C	-0.781	-0.357	-0.339	-34.418	-35.069	-1.482
1	2	C_G39:C31_C	-0.172	-0.293	-0.26	-3.462	-3.058	8.187
1	5	C_G42:C28_C	-0.629	-0.128	0.069	-7.04	-9.41	5.514
1	6	C_G43:C27_C	-0.339	-0.225	0.057	-23.382	-23.171	-0.468
1	7	C_G44:A26_C	-0.935	1.341	0.878	-24.953	-14.702	-20.425
1	21	C_G49:PSU65_C	-1.715	-0.442	-0.103	-11.997	-9.372	-5.103
1	23	C_G51:C63_C	-0.381	-0.203	0.14	-2.265	2.007	4.418
1	24	C_G52:C62_C	0.853	-0.243	-0.19	9.052	-12.479	-9.05
1	25	C_G53:C61_C	-0.919	-0.53	-0.25	-10.267	-2.987	3.628
1	27	C_PSU55:G18_C	0.166	-5.238	0.628	29.62	16.273	-102.253
1	9	C_U11:A24_C	-0.636	0.004	0.761	-14.086	-20.494	15.525
1	10	C_U12:A23_C	-0.08	-0.234	0.401	-8.202	-9.298	-7.294
1	41	D_5MU54:A58_D	4.312	-2.942	1.558	-1.87	20.353	-93.425
1	31	D_A3:U70_D	-0.584	0.168	0.881	-10.802	-13.343	21.396
1	54	D_A14:4SU8_D	-4.129	-2.029	0.898	8.493	22.325	-96.744
1	46	D_A41:U29_D	-0.318	-0.251	0.356	-2.91	-7.411	3.388
1	33	D_C5:G68_D	0.469	-0.165	0.241	8.084	-18.583	11.613
1	53	D_C13:G22_D	0.662	-0.069	-0.166	2.51	-1.549	3.726
1	43	D_C38:C32_D	-4.252	-1.712	0.187	-6.092	-6.51	-0.815
1	45	D_C40:G30_D	-0.315	-0.416	-0.067	-2.857	3.235	0.719
1	37	D_C50:G64_D	-0.643	-0.296	0.078	-7.185	-14.726	0.404
1	29	D_G1:C72_D	-2.303	-0.351	-1.173	-28.727	8.23	7.984
1	30	D_G2:C71_D	2.672	-0.288	-0.626	-24.213	16.367	-18.616
1	32	D_G4:U69_D	-2.175	-1.02	1.52	10.953	-9.343	5.11
1	34	D_G6:C67_D	-0.962	-0.021	0.841	3.434	-9.984	11.116
1	35	D_G7:C66_D	-0.679	-0.554	-0.422	2.521	1.406	-5.095
1	50	D_G10:U25_D	-2.325	-1.077	-0.897	-10.372	-17.585	0.558
1	55	D_G15:C48_D	0.405	4.595	0.193	7.097	-2.563	142.804
1	56	D_G19:C56_D	0.446	-0.065	-0.231	12.575	-20.382	-3.499
1	44	D_G39:C31_D	-0.185	-0.388	-0.057	8.918	-10.821	1.583
1	47	D_G42:C28_D	-0.108	0.12	0.309	-1.743	-11.843	6.505
1	48	D_G43:C27_D	0.309	0.13	-0.277	-19.569	-17.347	4.208
1	49	D_G44:A26_D	0.388	1.689	-0.033	-30.358	-11.665	-13.04
1	36	D_G49:PSU65_D	-1.088	-0.051	-0.609	-6.186	3.159	-0.494
1	38	D_G51:C63_D	-1.194	-0.131	-0.616	-15.844	0.036	11.604
1	39	D_G52:C62_D	-0.394	-0.46	-0.006	-4.81	-9.643	4.462
1	40	D_G53:C61_D	-0.247	-0.073	0.335	-13.87	-14.685	6.196
1	42	D_PSU55:G18_D	0.345	-5.286	-0.201	20.719	5.93	-95.177
1	51	D_U11:A24_D	-0.23	-0.326	-0.711	-6.631	-19.216	12.794
1	52	D_U12:A23_D	0.323	-0.304	0.397	-13.848	-5.265	1.523

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.