A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0023  PDB ID: 1EFW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
126C_5MU54:A58_C4.222-2.0740.841-3.38316.398-97.157
116C_A3:U70_C-0.5740.022-1.009-20.974-10.0915.646
112C_A14:A21_C-6.593-0.693-0.18413.328-6.85451.427
14C_A41:U29_C-0.143-0.280.1221.037-5.09-1.48
118C_C5:G68_C1.312-0.735-0.0622.468-26.785.392
111C_C13:G22_C1.705-0.429-0.83517.35-10.3852.24
11C_C38:C32_C-3.955-1.783-0.452-2.257-12.542-6.682
13C_C40:G30_C0.246-0.2920.2256.043-3.3974.615
122C_C50:G64_C-0.224-0.0980.0-11.719-14.197-0.363
114C_G1:C72_C1.31-0.209-2.101-27.9278.583-6.809
115C_G2:C71_C1.7010.097-1.044-31.4998.0112.424
117C_G4:U69_C-1.91-0.3030.1547.498-4.84513.387
119C_G6:C67_C-0.864-0.4420.944-5.0242.17310.521
120C_G7:C66_C-0.725-0.0870.044-2.904-3.909-2.42
18C_G10:U25_C-2.189-0.589-0.647-16.218-11.571-0.359
113C_G15:C48_C0.5074.3990.175-1.412-0.363146.5
128C_G19:C56_C-0.781-0.357-0.339-34.418-35.069-1.482
12C_G39:C31_C-0.172-0.293-0.26-3.462-3.0588.187
15C_G42:C28_C-0.629-0.1280.069-7.04-9.415.514
16C_G43:C27_C-0.339-0.2250.057-23.382-23.171-0.468
17C_G44:A26_C-0.9351.3410.878-24.953-14.702-20.425
121C_G49:PSU65_C-1.715-0.442-0.103-11.997-9.372-5.103
123C_G51:C63_C-0.381-0.2030.14-2.2652.0074.418
124C_G52:C62_C0.853-0.243-0.199.052-12.479-9.05
125C_G53:C61_C-0.919-0.53-0.25-10.267-2.9873.628
127C_PSU55:G18_C0.166-5.2380.62829.6216.273-102.253
19C_U11:A24_C-0.6360.0040.761-14.086-20.49415.525
110C_U12:A23_C-0.08-0.2340.401-8.202-9.298-7.294
141D_5MU54:A58_D4.312-2.9421.558-1.8720.353-93.425
131D_A3:U70_D-0.5840.1680.881-10.802-13.34321.396
154D_A14:4SU8_D-4.129-2.0290.8988.49322.325-96.744
146D_A41:U29_D-0.318-0.2510.356-2.91-7.4113.388
133D_C5:G68_D0.469-0.1650.2418.084-18.58311.613
153D_C13:G22_D0.662-0.069-0.1662.51-1.5493.726
143D_C38:C32_D-4.252-1.7120.187-6.092-6.51-0.815
145D_C40:G30_D-0.315-0.416-0.067-2.8573.2350.719
137D_C50:G64_D-0.643-0.2960.078-7.185-14.7260.404
129D_G1:C72_D-2.303-0.351-1.173-28.7278.237.984
130D_G2:C71_D2.672-0.288-0.626-24.21316.367-18.616
132D_G4:U69_D-2.175-1.021.5210.953-9.3435.11
134D_G6:C67_D-0.962-0.0210.8413.434-9.98411.116
135D_G7:C66_D-0.679-0.554-0.4222.5211.406-5.095
150D_G10:U25_D-2.325-1.077-0.897-10.372-17.5850.558
155D_G15:C48_D0.4054.5950.1937.097-2.563142.804
156D_G19:C56_D0.446-0.065-0.23112.575-20.382-3.499
144D_G39:C31_D-0.185-0.388-0.0578.918-10.8211.583
147D_G42:C28_D-0.1080.120.309-1.743-11.8436.505
148D_G43:C27_D0.3090.13-0.277-19.569-17.3474.208
149D_G44:A26_D0.3881.689-0.033-30.358-11.665-13.04
136D_G49:PSU65_D-1.088-0.051-0.609-6.1863.159-0.494
138D_G51:C63_D-1.194-0.131-0.616-15.8440.03611.604
139D_G52:C62_D-0.394-0.46-0.006-4.81-9.6434.462
140D_G53:C61_D-0.247-0.0730.335-13.87-14.6856.196
142D_PSU55:G18_D0.345-5.286-0.20120.7195.93-95.177
151D_U11:A24_D-0.23-0.326-0.711-6.631-19.21612.794
152D_U12:A23_D0.323-0.3040.397-13.848-5.2651.523

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.