A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: UH0002  PDB ID: 1EGK 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A4:DT151_D-0.176-0.168-0.059-0.07-13.5251.407
15A_A6:DT149_D0.138-0.0570.1753.624-2.454-4.334
17A_A8:DT147_D-0.761-0.3820.024-2.891-6.03-2.188
19A_A10:DG31_B-0.3951.561-0.143-20.151-14.298-22.299
118A_A19:DT22_B0.212-0.1520.719-1.356-6.4016.98
116A_C17:DG24_B0.512-0.3780.2021.783-10.428-6.45
11A_G2:DC153_D0.2-0.4520.072-3.252-15.34-11.502
12A_G3:DC152_D-0.072-0.142-0.034-6.054-9.195-0.641
14A_G5:DC150_D-0.3660.241-0.104-5.599-5.1079.288
16A_G7:DC148_D-0.39-0.150.287-0.97-1.9714.553
18A_G9:DC146_D-0.301-0.4030.3083.939-7.6545.258
111A_G12:DC29_B0.482-0.0640.3960.167-8.3713.487
112A_G13:DC28_B-0.215-0.2950.342-2.725-10.497-2.278
113A_G14:DC27_B0.0110.053-0.039-7.714-12.8811.024
115A_G16:DC25_B-0.2960.0760.563-2.422-12.9335.833
117A_G18:DC23_B0.4070.041-0.019-7.303-11.4242.227
119A_G20:DC21_B0.3410.031-0.0071.879-2.86-2.29
110A_U11:DA30_B0.25-0.1920.1024.912-18.977-3.884
114A_U15:DA26_B-0.69-0.044-0.0221.869-4.233-11.402
123B_DA45:DT38_B0.865-0.0080.1562.825-5.1016.031
120B_DC43:DA41_B-6.705-3.9351.227-49.9465.91720.75
121B_DG44:DC40_B-0.683-0.019-0.109-10.95826.6383.417
122C_A101:DA39_B-4.9445.209-0.51415.815-11.313-176.882
136C_A104:DT51_B0.19-0.001-0.382-10.6364.5178.635
138C_A106:DT49_B-0.191-0.179-0.383-0.831-2.9116.603
140C_A108:DT47_B0.199-0.234-0.0220.3851.7762.092
142C_A110:DG131_D0.2151.404-0.529-22.717-11.644-20.738
151C_A119:DT122_D-0.0810.1810.378-3.975-7.0659.94
149C_C117:DG124_D0.719-0.398-0.0558.993-9.885-0.73
134C_G102:DC53_B0.5460.0290.21914.471-4.0172.546
135C_G103:DC52_B-1.379-0.301-0.873-14.513-7.3636.295
137C_G105:DC50_B-0.5180.074-0.231-3.2271.0534.416
139C_G107:DC48_B-0.1070.032-0.225-5.546-3.4911.078
141C_G109:DC46_B-0.309-0.349-0.2442.436-4.6964.113
144C_G112:DC129_D-0.578-0.4180.5035.687-10.524-1.366
145C_G113:DC128_D0.5080.1290.036-8.474-16.9054.864
146C_G114:DC127_D-0.582-0.13-1.024-15.444-14.668-2.827
148C_G116:DC125_D-0.393-0.3660.035-3.27-7.141-3.933
150C_G118:DC123_D0.602-0.2-0.188-10.061-11.264-8.685
152C_G120:DC121_D-0.4240.1460.60920.854-7.303-4.896
143C_U111:DA130_D0.043-0.189-0.126-0.019-13.1822.699
147C_U115:DA126_D-0.8780.288-0.7736.879-18.467-2.585
127D_DA135:DT34_B0.932-0.0650.3117.347-10.4372.193
131D_DA139:A1_A3.403-5.3230.207-7.598-7.822171.688
133D_DA141:DC143_D6.868-4.4441.40940.0692.55927.265
125D_DC133:DG36_B-0.811-0.1040.247-9.124-0.51-2.795
129D_DC137:DG32_B-0.569-0.2131.091.383-13.581-15.022
132D_DC140:DG144_D1.184-0.223-0.45311.56313.735.31
124D_DG132:DC37_B-0.254-0.2750.8140.964-11.517-6.015
128D_DG136:DC33_B-0.31-0.3170.86118.066-6.547-4.239
126D_DT134:DA35_B-0.97-0.1330.2312.023-5.3631.454
130D_DT138:DA145_D-0.535-0.391.174-3.943-8.17-0.823

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.