A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: PD0121  PDB ID: 1EGW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11E_DA2:DT17_F-0.113-0.243-0.159-8.952-5.6891.192
12E_DA3:DT16_F0.085-0.140.236-1.414-12.205-0.388
16E_DA7:DT12_F-0.143-0.086-0.111-4.31-12.0563.709
19E_DA10:DT9_F-0.004-0.24-0.14-7.224-10.152-0.368
112E_DA13:DT6_F-0.16-0.255-0.0686.017-9.4660.122
14E_DC5:DG14_F0.145-0.1550.312-12.34-8.2710.66
114E_DC15:DG4_F0.21-0.150.230.614-12.5252.605
13E_DG4:DC15_F-0.0760.0190.229-0.138-12.0492.991
113E_DG14:DC5_F-0.109-0.0880.3212.718-9.0921.254
15E_DT6:DA13_F0.081-0.212-0.112-6.538-9.4311.526
17E_DT8:DA11_F-0.102-0.0470.145-0.96-10.2822.279
18E_DT9:DA10_F-0.189-0.142-0.1436.495-11.646-0.094
110E_DT11:DA8_F-0.091-0.1690.058-0.563-12.4923.947
111E_DT12:DA7_F0.031-0.015-0.224.144-12.54.397
115E_DT16:DA3_F-0.0080.1550.272-1.613-12.5193.198
116E_DT17:DA2_F1.3530.372-0.29811.686-3.53617.863
117G_DA2:DT17_H0.2540.159-0.627-14.825-9.03811.105
118G_DA3:DT16_H0.017-0.0210.2361.029-11.3211.582
122G_DA7:DT12_H0.003-0.031-0.208-3.198-12.8533.684
123G_DA8:DT11_H0.131-0.1680.0991.039-11.9493.064
125G_DA10:DT9_H0.091-0.17-0.144-6.092-10.745-1.087
126G_DA11:DT8_H0.3480.0460.1330.676-8.5332.691
128G_DA13:DT6_H-0.088-0.217-0.0746.538-9.4150.979
120G_DC5:DG14_H0.187-0.1510.31-12.709-10.1640.976
130G_DC15:DG4_H0.141-0.0990.206-1.149-11.4243.522
119G_DG4:DC15_H-0.168-0.1030.2851.41-11.6233.067
129G_DG14:DC5_H-0.081-0.090.25911.961-7.9491.765
121G_DT6:DA13_H0.122-0.187-0.091-5.915-9.2340.465
124G_DT9:DA10_H-0.024-0.183-0.1456.831-10.393-0.745
127G_DT12:DA7_H0.103-0.077-0.1824.42-11.222.906
131G_DT16:DA3_H-0.257-0.0650.218-0.315-13.4320.844
132G_DT17:DA2_H0.257-0.407-0.23413.518-0.537-1.699

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.