A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Oct-2019 number of released structures: 10416
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NDB ID: PD0121  PDB ID: 1EGW 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11EE_DA2DA3:DT16DT17_FF0.0050.413.032-2.3978.29630.123-0.721-0.4373.02615.5654.49831.309
12EE_DA3DG4:DC15DT16_FF-0.268-0.7613.307-2.481.55329.221-1.837-0.0083.2743.0684.89929.364
16EE_DA7DT8:DA11DT12_FF0.033-0.5353.108-2.3020.07327.825-1.126-0.5893.0940.1514.77727.918
19EE_DA10DT11:DA8DT9_FF-0.031-0.2293.072-2.134-4.40138.1360.169-0.2043.076-6.7023.2538.437
112EE_DA13DG14:DC5DT6_FF0.3540.4063.125-2.9423.2829.4080.134-1.283.1016.4155.75529.729
14EE_DC5DT6:DA13DG14_FF-0.3050.433.1443.8783.81228.7710.0561.4123.1067.587-7.71829.27
114EE_DC15DT16:DA3DG4_FF0.411-0.6473.3011.1590.62632.336-1.272-0.5313.3011.124-2.0832.363
13EE_DG4DC5:DG14DC15_FF0.102-0.7533.5510.912-2.33842.933-0.774-0.0413.586-3.191-1.24543.003
113EE_DG14DC15:DG4DC5_FF-0.25-0.8513.559-1.126-1.37341.795-1.0350.2213.589-1.9241.57841.831
15EE_DT6DA7:DT12DA13_FF0.3122.2133.169-2.359-4.6750.5242.888-0.5192.951-5.4542.75650.776
17EE_DT8DT9:DA10DA11_FF-0.063-0.1813.0932.354-6.17336.7210.4930.3953.072-9.703-3.737.29
18EE_DT9DA10:DT9DA10_FF-0.016-0.5553.573-0.6962.15738.898-1.117-0.0683.5383.2361.04538.962
110EE_DT11DT12:DA7DA8_FF-0.01-0.263.1411.678-0.89828.891-0.330.3773.142-1.796-3.35928.953
111EE_DT12DA13:DT6DA7_FF-0.4122.0863.1960.289-5.54949.0092.8910.5152.956-6.664-0.34749.303
115EE_DT16DT17:DA2DA3_FF0.7660.7712.9825.28.27334.9630.13-0.5343.15513.448-8.45336.261
116GG_DA2DA3:DT16DT17_HH0.10.6542.812-6.574.38233.0680.509-1.0852.8027.56511.34333.972
117GG_DA3DG4:DC15DT16_HH-0.351-0.7243.291-2.3641.98731.735-1.6810.2083.2573.6234.31131.881
121GG_DA7DA8:DT11DT12_HH0.085-0.3613.121-1.986-0.38728.252-0.652-0.6123.112-0.7924.06228.323
122GG_DA8DT9:DA10DT11_HH0.012-0.2413.0972.609-4.56737.7380.1820.2963.098-7.019-4.00938.09
124GG_DA10DA11:DT8DT9_HH0.123-0.1153.142-2.409-6.69138.3260.608-0.4663.105-10.0853.63238.956
125GG_DA11DT12:DA7DT8_HH-0.045-0.4723.0942.7660.1227.625-1.0110.7243.0730.251-5.77427.76
127GG_DA13DG14:DC5DT6_HH0.3360.3943.162-2.9493.74629.4120.007-1.2513.1397.3175.76129.787
119GG_DC5DT6:DA13DG14_HH-0.3560.4143.1193.3413.73228.830.0471.3973.0877.425-6.64729.253
129GG_DC15DT16:DA3DG4_HH0.109-0.7873.2491.9731.15232.035-1.6270.1543.222.084-3.56932.114
118GG_DG4DC5:DG14DC15_HH0.174-0.8093.61.681-2.19441.39-0.883-0.0483.64-3.1-2.37541.478
128GG_DG14DC15:DG4DC5_HH-0.157-0.7323.589-1.327-2.20441.533-0.7740.0663.624-3.1041.86941.609
120GG_DT6DA7:DT12DA13_HH0.3532.1483.176-0.537-5.49750.2632.881-0.4492.937-6.4490.6350.546
123GG_DT9DA10:DT9DA10_HH-0.041-0.6683.529-0.182.70838.334-1.3760.0393.4754.1180.27438.426
126GG_DT12DA13:DT6DA7_HH-0.3152.1533.1881.339-4.71149.9892.8570.4622.977-5.559-1.5850.213
130GG_DT16DT17:DA2DA3_HH-0.2110.5113.0163.8069.36831.145-0.6180.9952.99416.899-6.86532.707

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.