A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PR0024  PDB ID: 1EIY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15C_A5:U68_C-0.5650.184-0.13716.714-14.5934.06
123C_A14:U8_C-3.955-1.4850.0080.86810.858-94.56
117C_A43:U27_C-0.391-0.1350.3566.712-6.551-6.567
12C_C2:G71_C1.356-0.5040.8360.38-5.2686.71
13C_C3:G70_C1.204-0.291-0.18717.012-1.4756.135
120C_C11:G24_C0.121-0.0120.79-14.6954.755-2.471
122C_C13:G22_C1.549-0.1670.735-5.74-2.8834.03
114C_C40:G30_C0.396-0.057-1.48124.753-11.498-5.936
116C_C42:G28_C1.102-0.435-0.274-0.787-9.4711.707
18C_C49:G65_C0.519-0.4790.491-7.844-14.4810.606
110C_C51:G63_C-0.090.178-0.292.682-20.1872.271
11C_G1:C72_C-1.01-0.2481.0971.57515.5722.179
14C_G4:C69_C-0.246-0.208-1.035-1.45-11.5461.63
16C_G6:C67_C0.121-0.3440.333.548-13.857-1.7
17C_G7:C66_C-0.181-0.5550.3143.164-8.656-0.171
119C_G10:C25_C-1.103-0.117-0.268-15.498-6.4641.83
124C_G15:C48_C-0.3641.852-0.5855.957-11.607167.848
125C_G18:U55_C0.256.435-0.3148.1337.116108.94
126C_G19:C56_C1.465-0.3241.2433.722-0.1397.701
115C_G41:C29_C0.043-0.008-0.304-1.075-5.7552.992
118C_G44:A26_C-0.0661.2031.821-19.326-22.118-24.897
19C_G50:C64_C-0.0980.5970.7030.846-8.9562.7
111C_G52:C62_C-0.5250.2450.0692.665-6.3571.914
112C_G53:C61_C-0.814-0.342-1.286-14.785-9.613-0.227
121C_U12:A23_C-0.336-0.2190.216-4.454-9.509-11.442
113C_U39:A31_C-0.9750.5-0.62816.8742.204-8.714

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.