1EO4: Base Pair Morphology Parameters

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As of 19-Jan-2022 number of released structures: 11891

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NDB ID: PD0130 PDB ID: 1EO4

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	C_DA3:DT10_D	-0.124	-0.05	0.142	5.197	-19.607	7.802
1	3	C_DA5:DT8_D	-0.001	-0.089	0.652	9.14	-2.085	1.983
1	5	C_DA7:TSP6_D	0.061	-0.019	0.042	-13.521	0.759	3.014
1	7	C_DC9:DG4_D	0.16	-0.227	0.216	-4.74	-9.935	3.982
1	2	C_DG4:DC9_D	-0.022	-0.068	0.148	8.809	-14.927	3.587
1	6	C_DT8:DA5_D	-0.054	-0.179	0.198	-0.981	-1.155	3.985
1	8	C_DT10:DA3_D	-0.328	-0.145	0.146	-2.182	-20.108	5.277
1	9	C_DT11:DA2_D	0.159	-0.349	-0.104	1.224	-23.143	9.263
1	4	C_TSP6:DA7_D	-0.355	-0.141	-0.258	26.128	-0.577	-1.166

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.