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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
PD0130
PDB ID:
1EO4
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
C_DA3:DT10_D
-0.124
-0.05
0.142
5.197
-19.607
7.802
1
3
C_DA5:DT8_D
-0.001
-0.089
0.652
9.14
-2.085
1.983
1
5
C_DA7:TSP6_D
0.061
-0.019
0.042
-13.521
0.759
3.014
1
7
C_DC9:DG4_D
0.16
-0.227
0.216
-4.74
-9.935
3.982
1
2
C_DG4:DC9_D
-0.022
-0.068
0.148
8.809
-14.927
3.587
1
6
C_DT8:DA5_D
-0.054
-0.179
0.198
-0.981
-1.155
3.985
1
8
C_DT10:DA3_D
-0.328
-0.145
0.146
-2.182
-20.108
5.277
1
9
C_DT11:DA2_D
0.159
-0.349
-0.104
1.224
-23.143
9.263
1
4
C_TSP6:DA7_D
-0.355
-0.141
-0.258
26.128
-0.577
-1.166
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.