1ESY: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

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NDB ID: 1ESY PDB ID: 1ESY

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_A5:A15_A	1.839	1.804	-0.452	-3.95	-15.025	-36.746
1	3	A_C3:G17_A	0.345	-0.17	-0.098	6.649	-12.306	-2.583
1	6	A_C6:G13_A	0.252	-0.132	-0.205	8.668	-9.529	-2.445
1	1	A_G1:C19_A	-0.33	-0.13	-0.261	-17.447	-14.606	-2.538
1	2	A_G2:C18_A	-0.272	-0.152	-0.141	-0.316	-8.366	-2.19
1	4	A_G4:C16_A	-0.361	-0.173	-0.419	-11.49	-13.415	-1.467
1	7	A_U7:A12_A	-0.034	0.065	-0.567	27.23	3.932	-4.853

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.