1ET4: Base Pair Morphology Parameters

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As of 15-Mar-2023 number of released structures: 12686

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NDB ID: DR0004 PDB ID: 1ET4

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	8	A_A231:A214_A	-1.54	-1.363	-0.591	20.167	-10.041	172.629
1	6	A_C229:U215_A	0.122	0.35	-0.795	0.969	-8.806	-41.671
1	10	A_C233:G212_A	0.049	-0.152	0.153	1.18	-15.625	6.16
1	1	A_G207:C222_A	-0.039	-0.196	0.224	-4.462	-14.706	-1.024
1	2	A_G208:C221_A	-0.081	0.02	0.299	-11.142	-25.774	5.533
1	4	A_G226:C219_A	0.139	0.025	0.156	-13.098	-12.405	-0.269
1	5	A_G228:C218_A	-0.032	-0.057	-0.184	-22.611	-13.916	0.087
1	7	A_G230:C211_A	-0.482	-0.284	0.676	3.453	-19.482	-3.769
1	9	A_G232:C213_A	-0.218	-0.081	0.335	1.838	-8.368	-1.452
1	3	A_U209:A220_A	0.06	0.095	0.185	-14.7	-18.472	-5.099
1	18	B_A331:A314_B	-1.645	-1.401	-0.339	20.327	-5.764	174.653
1	16	B_C329:U315_B	-0.181	0.562	-0.558	-0.384	-9.532	-45.585
1	20	B_C333:G312_B	0.42	0.014	0.217	-3.816	-11.354	5.035
1	11	B_G307:C322_B	-0.126	-0.254	0.293	6.706	-14.573	-1.907
1	12	B_G308:C321_B	-0.236	-0.278	0.169	-5.041	-31.197	4.961
1	14	B_G326:C319_B	0.16	-0.179	-0.282	-15.038	-10.07	-3.402
1	15	B_G328:C318_B	-0.166	-0.09	0.017	-17.232	-13.886	1.906
1	17	B_G330:C311_B	-0.103	-0.25	0.257	-4.486	-21.021	-5.152
1	19	B_G332:C313_B	-0.18	-0.077	0.082	-1.404	-7.389	1.55
1	13	B_U309:A320_B	0.122	-0.006	0.232	-12.995	-18.337	-9.321
1	28	C_A431:A414_C	-1.418	-1.525	-0.456	20.56	-6.521	173.1
1	26	C_C429:U415_C	0.076	0.348	-0.752	-3.137	-15.471	-39.575
1	30	C_C433:G412_C	0.683	-0.201	0.074	0.43	-17.419	6.857
1	21	C_G407:C422_C	-0.155	-0.062	-0.113	-6.344	-18.351	0.732
1	22	C_G408:C421_C	-0.334	-0.095	-0.164	-17.685	-26.179	6.523
1	24	C_G426:C419_C	0.026	-0.141	-0.371	-13.401	-14.499	-1.792
1	25	C_G428:C418_C	-0.076	-0.053	-0.244	-22.444	-12.416	-0.478
1	27	C_G430:C411_C	-0.424	-0.063	0.311	-4.0	-26.863	-0.826
1	29	C_G432:C413_C	-0.33	-0.067	-0.113	-5.504	-13.852	0.621
1	23	C_U409:A420_C	0.273	0.033	0.167	-14.102	-14.705	-2.218
1	38	D_A531:A514_D	-1.572	-1.362	-0.55	19.297	-8.693	175.433
1	36	D_C529:U515_D	-0.052	0.306	-0.953	-0.4	-15.105	-42.391
1	40	D_C533:G512_D	0.536	-0.349	-0.148	1.334	-14.815	-0.446
1	31	D_G507:C522_D	-0.315	-0.085	-0.104	-7.468	-19.43	1.897
1	32	D_G508:C521_D	-0.138	0.006	-0.157	-14.227	-27.785	4.752
1	34	D_G526:C519_D	-0.187	-0.09	-0.407	-16.41	-10.645	-2.012
1	35	D_G528:C518_D	0.009	-0.124	-0.298	-23.257	-12.588	1.043
1	37	D_G530:C511_D	-0.155	-0.039	0.51	-2.143	-18.763	-2.698
1	39	D_G532:C513_D	-0.402	-0.184	-0.109	-8.749	-12.363	-0.127
1	33	D_U509:A520_D	0.208	0.008	0.086	-14.123	-12.931	-5.713
1	48	E_A131:A114_E	-1.556	-1.373	-0.752	25.789	-10.134	174.368
1	46	E_C129:U115_E	-0.236	0.362	-0.578	-1.687	-7.295	-42.691
1	50	E_C133:G112_E	0.576	-0.534	-0.295	0.696	-12.378	3.771
1	41	E_G107:C122_E	-0.18	-0.043	-0.357	-8.596	-19.274	0.948
1	42	E_G108:C121_E	-0.466	-0.07	-0.277	-16.39	-27.538	6.145
1	44	E_G126:C119_E	-0.037	-0.159	-0.21	-11.695	-11.632	-1.989
1	45	E_G128:C118_E	-0.089	-0.018	0.117	-17.796	-11.979	0.611
1	47	E_G130:C111_E	-0.126	-0.147	0.402	-3.732	-19.44	-2.689
1	49	E_G132:C113_E	-0.257	0.066	0.041	-1.965	-14.131	0.788
1	43	E_U109:A120_E	0.204	0.072	-0.04	-10.693	-15.97	-2.059

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.