1ETF: Base Pair Morphology Parameters

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As of 9-Feb-2023 number of released structures: 12635

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NDB ID: 1ETF PDB ID: 1ETF

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	12	A_A52:U66_A	-0.209	-0.024	0.263	-18.47	-13.608	-2.468
1	4	A_C44:G76_A	-0.037	-0.239	1.222	-7.283	2.409	-2.305
1	9	A_C49:G70_A	0.365	-0.482	1.336	-10.856	-16.495	-7.385
1	11	A_C51:G67_A	-0.971	-0.297	1.16	-10.521	-13.511	-7.302
1	14	A_C54:G64_A	0.07	-0.226	1.145	-2.526	15.499	11.297
1	1	A_G41:C79_A	1.032	-0.372	1.218	-1.791	-5.151	-2.643
1	2	A_G42:C78_A	0.834	-0.356	1.085	-1.375	3.411	-2.08
1	6	A_G46:C74_A	-0.426	-0.033	-0.027	21.125	8.447	-2.963
1	7	A_G47:A73_A	-0.151	1.398	0.727	6.967	-31.058	-27.101
1	8	A_G48:G71_A	-0.698	-0.374	-1.591	9.746	-5.752	172.335
1	10	A_G50:C69_A	0.656	-0.223	0.909	-1.988	-14.285	-12.383
1	13	A_G53:C65_A	0.706	-0.057	0.594	8.274	5.125	-7.025
1	15	A_G55:A58_A	5.627	-4.562	1.43	26.395	34.956	10.088
1	3	A_U43:G77_A	1.36	-0.452	0.781	-9.608	-7.414	-6.003
1	5	A_U45:A75_A	-1.131	-0.48	1.199	13.685	-2.839	-6.814

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.