1ETF: Base Pair Morphology Step Parameters

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As of 9-Feb-2023 number of released structures: 12635

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NDB ID: 1ETF PDB ID: 1ETF

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	12	AA_A52G53:C65U66_AA	-0.154	-1.516	2.74	-1.748	-3.519	31.713	-2.203	0.006	2.891	-6.409	3.184	31.95
1	4	AA_C44U45:A75G76_AA	-0.304	-1.904	2.852	-0.33	4.215	22.232	-6.109	0.676	2.457	10.805	0.845	22.625
1	9	AA_C49G50:C69G70_AA	-0.286	-1.631	3.166	3.553	-7.064	33.605	-1.638	1.042	3.382	-12.012	-6.043	34.497
1	11	AA_C51A52:U66G67_AA	0.756	-0.858	4.006	2.957	1.884	39.137	-1.552	-0.693	4.006	2.806	-4.403	39.287
1	14	AA_C54G55:A58G64_AA	-0.956	-1.047	3.623	-15.064	-11.356	43.242	-0.188	-0.293	3.88	-14.609	19.38	46.997
1	1	AA_G41G42:C78C79_AA	0.364	-1.672	3.864	2.192	-7.945	27.063	-1.101	-0.105	4.191	-16.498	-4.552	28.268
1	2	AA_G42U43:G77C78_AA	-0.125	-1.518	4.138	7.007	5.934	30.017	-4.169	1.839	3.657	11.134	-13.147	31.359
1	6	AA_G46G47:A73C74_AA	-1.384	-0.897	4.379	-2.28	-22.888	41.321	1.576	1.465	4.352	-29.823	2.97	47.046
1	7	AA_G47G48:G71A73_AA	-0.757	-1.823	4.035	-13.572	21.251	-84.94	0.726	-0.92	4.187	-15.447	-9.865	-87.917
1	8	AA_G48C49:G70G71_AA	0.189	-1.121	3.663	-11.057	-17.312	124.73	-0.467	-0.21	3.726	-9.743	6.222	125.689
1	10	AA_G50C51:G67C69_AA	0.774	-1.501	3.637	-4.801	20.669	25.734	-5.893	-2.112	1.805	39.03	9.066	33.24
1	13	AA_G53C54:G64C65_AA	0.408	-1.922	3.829	-5.953	24.226	19.756	-7.513	-1.728	0.874	50.698	12.458	31.725
1	3	AA_U43C44:G76G77_AA	0.074	-1.643	3.372	-3.839	12.453	22.951	-6.629	-1.095	2.167	28.533	8.796	26.349
1	5	AA_U45G46:C74A75_AA	-0.025	-1.671	3.011	-0.651	17.31	29.664	-4.992	-0.038	1.792	30.733	1.156	34.253

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.