A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Oct-2021 number of released structures: 11724
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NDB ID: TR0002  PDB ID: 1EVV 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
122A_2MG10:C25_A-0.211-0.31-0.046-4.332-7.9011.097
117A_5MC40:G30_A-0.77-0.215-0.0444.691-14.351-1.779
18A_5MC49:G65_A-0.102-0.230.045-0.835-7.222-2.194
113A_5MU54:1MA58_A4.325-1.864-0.0480.312.629-100.106
15A_A5:U68_A0.112-0.2030.2396.38-19.4043.681
126A_A14:U8_A-4.121-1.8980.5175.66610.912-101.223
115A_A38:OMC32_A-6.405-2.0220.743-3.8641.184-0.75
121A_A44:M2G26_A0.451.374-0.386-20.184-36.279-14.648
12A_C2:G71_A-0.287-0.2030.369-10.382-5.7211.989
123A_C11:G24_A0.218-0.2350.193-6.717-18.6434.132
125A_C13:G22_A0.256-0.102-0.0815.583-2.1411.51
11A_G1:C72_A-0.856-0.624-0.059-0.778-6.084-1.897
13A_G3:C70_A-0.077-0.1350.4350.678-10.808-2.562
14A_G4:U69_A-2.215-0.4670.64910.047-5.8810.141
127A_G15:C48_A0.1253.9140.1011.8250.42152.066
128A_G19:C56_A-0.34-0.0050.028-24.992-25.3752.475
119A_G42:C28_A-0.005-0.3530.471-4.751-9.368-1.525
120A_G43:C27_A-0.186-0.3210.237-9.407-19.973-2.993
110A_G51:C63_A-0.304-0.1570.044-4.614-13.34.243
112A_G53:C61_A-0.344-0.153-0.181-10.759-6.4951.824
116A_PSU39:A31_A-2.076-0.1480.326.125-15.101-5.211
114A_PSU55:G18_A0.517-5.7280.29416.781.567-92.692
16A_U6:A67_A-0.484-0.250.299-9.165-19.8145.553
17A_U7:A66_A-0.058-0.286-0.062-2.619-3.6851.441
124A_U12:A23_A-0.042-0.1160.427-9.471-3.636-2.716
118A_U41:A29_A-0.0620.0580.352-4.997-8.75912.047
19A_U50:A64_A-0.13-0.2470.109-3.253-5.803-2.405
111A_U52:A62_A-0.557-0.1530.084-1.354-6.604-0.441

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.