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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Feb-2023 number of released structures: 12635
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NDB ID:
TR0002
PDB ID:
1EVV
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
22
A_2MG10:C25_A
-0.211
-0.31
-0.046
-4.332
-7.901
1.097
1
17
A_5MC40:G30_A
-0.77
-0.215
-0.044
4.691
-14.351
-1.779
1
8
A_5MC49:G65_A
-0.102
-0.23
0.045
-0.835
-7.222
-2.194
1
13
A_5MU54:1MA58_A
4.325
-1.864
-0.048
0.31
2.629
-100.106
1
5
A_A5:U68_A
0.112
-0.203
0.239
6.38
-19.404
3.681
1
26
A_A14:U8_A
-4.121
-1.898
0.517
5.666
10.912
-101.223
1
15
A_A38:OMC32_A
-6.405
-2.022
0.743
-3.864
1.184
-0.75
1
21
A_A44:M2G26_A
0.45
1.374
-0.386
-20.184
-36.279
-14.648
1
2
A_C2:G71_A
-0.287
-0.203
0.369
-10.382
-5.721
1.989
1
23
A_C11:G24_A
0.218
-0.235
0.193
-6.717
-18.643
4.132
1
25
A_C13:G22_A
0.256
-0.102
-0.081
5.583
-2.141
1.51
1
1
A_G1:C72_A
-0.856
-0.624
-0.059
-0.778
-6.084
-1.897
1
3
A_G3:C70_A
-0.077
-0.135
0.435
0.678
-10.808
-2.562
1
4
A_G4:U69_A
-2.215
-0.467
0.649
10.047
-5.881
0.141
1
27
A_G15:C48_A
0.125
3.914
0.101
1.825
0.42
152.066
1
28
A_G19:C56_A
-0.34
-0.005
0.028
-24.992
-25.375
2.475
1
19
A_G42:C28_A
-0.005
-0.353
0.471
-4.751
-9.368
-1.525
1
20
A_G43:C27_A
-0.186
-0.321
0.237
-9.407
-19.973
-2.993
1
10
A_G51:C63_A
-0.304
-0.157
0.044
-4.614
-13.3
4.243
1
12
A_G53:C61_A
-0.344
-0.153
-0.181
-10.759
-6.495
1.824
1
16
A_PSU39:A31_A
-2.076
-0.148
0.32
6.125
-15.101
-5.211
1
14
A_PSU55:G18_A
0.517
-5.728
0.294
16.78
1.567
-92.692
1
6
A_U6:A67_A
-0.484
-0.25
0.299
-9.165
-19.814
5.553
1
7
A_U7:A66_A
-0.058
-0.286
-0.062
-2.619
-3.685
1.441
1
24
A_U12:A23_A
-0.042
-0.116
0.427
-9.471
-3.636
-2.716
1
18
A_U41:A29_A
-0.062
0.058
0.352
-4.997
-8.759
12.047
1
9
A_U50:A64_A
-0.13
-0.247
0.109
-3.253
-5.803
-2.405
1
11
A_U52:A62_A
-0.557
-0.153
0.084
-1.354
-6.604
-0.441
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.