1EVV: Base Pair Morphology Parameters

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As of 9-Feb-2023 number of released structures: 12635

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NDB ID: TR0002 PDB ID: 1EVV

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	22	A_2MG10:C25_A	-0.211	-0.31	-0.046	-4.332	-7.901	1.097
1	17	A_5MC40:G30_A	-0.77	-0.215	-0.044	4.691	-14.351	-1.779
1	8	A_5MC49:G65_A	-0.102	-0.23	0.045	-0.835	-7.222	-2.194
1	13	A_5MU54:1MA58_A	4.325	-1.864	-0.048	0.31	2.629	-100.106
1	5	A_A5:U68_A	0.112	-0.203	0.239	6.38	-19.404	3.681
1	26	A_A14:U8_A	-4.121	-1.898	0.517	5.666	10.912	-101.223
1	15	A_A38:OMC32_A	-6.405	-2.022	0.743	-3.864	1.184	-0.75
1	21	A_A44:M2G26_A	0.45	1.374	-0.386	-20.184	-36.279	-14.648
1	2	A_C2:G71_A	-0.287	-0.203	0.369	-10.382	-5.721	1.989
1	23	A_C11:G24_A	0.218	-0.235	0.193	-6.717	-18.643	4.132
1	25	A_C13:G22_A	0.256	-0.102	-0.081	5.583	-2.141	1.51
1	1	A_G1:C72_A	-0.856	-0.624	-0.059	-0.778	-6.084	-1.897
1	3	A_G3:C70_A	-0.077	-0.135	0.435	0.678	-10.808	-2.562
1	4	A_G4:U69_A	-2.215	-0.467	0.649	10.047	-5.881	0.141
1	27	A_G15:C48_A	0.125	3.914	0.101	1.825	0.42	152.066
1	28	A_G19:C56_A	-0.34	-0.005	0.028	-24.992	-25.375	2.475
1	19	A_G42:C28_A	-0.005	-0.353	0.471	-4.751	-9.368	-1.525
1	20	A_G43:C27_A	-0.186	-0.321	0.237	-9.407	-19.973	-2.993
1	10	A_G51:C63_A	-0.304	-0.157	0.044	-4.614	-13.3	4.243
1	12	A_G53:C61_A	-0.344	-0.153	-0.181	-10.759	-6.495	1.824
1	16	A_PSU39:A31_A	-2.076	-0.148	0.32	6.125	-15.101	-5.211
1	14	A_PSU55:G18_A	0.517	-5.728	0.294	16.78	1.567	-92.692
1	6	A_U6:A67_A	-0.484	-0.25	0.299	-9.165	-19.814	5.553
1	7	A_U7:A66_A	-0.058	-0.286	-0.062	-2.619	-3.685	1.441
1	24	A_U12:A23_A	-0.042	-0.116	0.427	-9.471	-3.636	-2.716
1	18	A_U41:A29_A	-0.062	0.058	0.352	-4.997	-8.759	12.047
1	9	A_U50:A64_A	-0.13	-0.247	0.109	-3.253	-5.803	-2.405
1	11	A_U52:A62_A	-0.557	-0.153	0.084	-1.354	-6.604	-0.441

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.