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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Feb-2023 number of released structures: 12635
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NDB ID:
TR0002
PDB ID:
1EVV
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
21
AA_2MG10C11:G24C25_AA
-0.954
-1.611
3.145
-2.754
4.622
38.11
-2.987
1.125
2.996
7.035
4.192
38.474
1
16
AA_5MC40U41:A29G30_AA
0.776
-1.659
3.603
-2.077
4.907
41.013
-2.911
-1.337
3.35
6.968
2.949
41.343
1
8
AA_5MC49U50:A64G65_AA
-0.921
-2.096
3.197
-1.479
7.698
29.017
-5.473
1.503
2.61
15.021
2.886
30.036
1
13
AA_5MU54PSU55:G181MA58_AA
2.144
-2.392
3.334
6.695
4.161
43.579
-3.577
-2.201
3.381
5.55
-8.931
44.252
1
5
AA_A5U6:A67U68_AA
0.46
-1.714
3.481
-0.284
8.458
28.412
-5.121
-0.959
2.858
16.767
0.563
29.621
1
25
AA_A14G15:C48U8_AA
2.419
-3.447
3.324
0.966
6.987
-63.638
2.933
2.327
3.612
-6.605
0.913
-63.987
1
14
AA_A38PSU39:A31OMC32_AA
-0.236
-1.364
3.073
-7.01
10.92
47.84
-2.361
-0.187
2.726
13.185
8.464
49.468
1
20
AA_A442MG10:C25M2G26_AA
-2.885
-2.65
3.379
14.547
16.128
58.78
-3.185
3.351
1.967
15.854
-14.3
62.326
1
2
AA_C2G3:C70G71_AA
-0.086
-1.345
2.936
-0.674
2.48
29.475
-3.097
0.043
2.817
4.863
1.322
29.584
1
22
AA_C11U12:A23G24_AA
-0.281
-1.204
3.261
-1.155
7.295
32.327
-3.289
0.306
2.934
12.892
2.041
33.138
1
24
AA_C13A14:U8G22_AA
-2.385
-0.296
3.28
-0.326
-5.144
57.862
-0.03
2.439
3.305
-5.305
0.336
58.071
1
1
AA_G1C2:G71C72_AA
-0.675
-2.102
3.342
-5.597
9.233
42.259
-3.696
0.386
2.905
12.562
7.615
43.555
1
3
AA_G3G4:U69C70_AA
0.228
-1.804
2.736
-4.899
8.534
24.05
-5.755
-1.506
1.911
19.469
11.176
25.958
1
4
AA_G4A5:U68U69_AA
-0.22
-1.391
3.253
2.047
3.555
42.953
-2.232
0.496
3.121
4.841
-2.788
43.14
1
18
AA_G42G43:C27C28_AA
-0.082
-1.515
3.277
1.454
5.735
36.174
-3.171
0.323
3.005
9.161
-2.322
36.639
1
19
AA_G43A44:M2G26C27_AA
-0.675
-1.092
3.412
5.653
6.026
38.404
-2.347
1.682
3.087
9.034
-8.474
39.25
1
10
AA_G51U52:A62C63_AA
0.264
-1.309
3.192
-0.992
3.38
28.739
-3.329
-0.737
3.011
6.777
1.99
28.95
1
12
AA_G535MU54:1MA58C61_AA
-2.067
-2.577
3.179
0.42
-3.959
91.352
-1.724
1.452
3.257
-2.766
-0.294
91.419
1
15
AA_PSU395MC40:G30A31_AA
0.005
-1.414
3.076
-0.499
7.122
38.748
-2.861
-0.062
2.783
10.625
0.745
39.376
1
6
AA_U6U7:A66A67_AA
-0.186
-1.258
3.078
1.994
9.787
34.681
-3.268
0.552
2.623
16.011
-3.262
36.048
1
7
AA_U75MC49:G65A66_AA
-0.461
-2.061
3.259
0.685
3.485
34.275
-4.003
0.881
3.032
5.893
-1.158
34.453
1
23
AA_U12C13:G22A23_AA
1.734
-2.071
2.848
5.682
1.04
27.192
-4.542
-2.364
3.06
2.18
-11.915
27.788
1
17
AA_U41G42:C28A29_AA
-0.302
-1.779
3.023
-0.136
7.76
26.076
-5.437
0.613
2.405
16.732
0.294
27.187
1
9
AA_U50G51:C63A64_AA
0.267
-1.43
3.335
0.966
4.892
31.549
-3.476
-0.313
3.091
8.927
-1.762
31.931
1
11
AA_U52G53:C61A62_AA
0.979
-1.975
3.373
2.047
7.784
33.723
-4.484
-1.337
2.912
13.185
-3.468
34.643
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.