1EVV: Base Pair Morphology Step Parameters

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NDB ID: TR0002 PDB ID: 1EVV

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	21	AA_2MG10C11:G24C25_AA	-0.954	-1.611	3.145	-2.754	4.622	38.11	-2.987	1.125	2.996	7.035	4.192	38.474
1	16	AA_5MC40U41:A29G30_AA	0.776	-1.659	3.603	-2.077	4.907	41.013	-2.911	-1.337	3.35	6.968	2.949	41.343
1	8	AA_5MC49U50:A64G65_AA	-0.921	-2.096	3.197	-1.479	7.698	29.017	-5.473	1.503	2.61	15.021	2.886	30.036
1	13	AA_5MU54PSU55:G181MA58_AA	2.144	-2.392	3.334	6.695	4.161	43.579	-3.577	-2.201	3.381	5.55	-8.931	44.252
1	5	AA_A5U6:A67U68_AA	0.46	-1.714	3.481	-0.284	8.458	28.412	-5.121	-0.959	2.858	16.767	0.563	29.621
1	25	AA_A14G15:C48U8_AA	2.419	-3.447	3.324	0.966	6.987	-63.638	2.933	2.327	3.612	-6.605	0.913	-63.987
1	14	AA_A38PSU39:A31OMC32_AA	-0.236	-1.364	3.073	-7.01	10.92	47.84	-2.361	-0.187	2.726	13.185	8.464	49.468
1	20	AA_A442MG10:C25M2G26_AA	-2.885	-2.65	3.379	14.547	16.128	58.78	-3.185	3.351	1.967	15.854	-14.3	62.326
1	2	AA_C2G3:C70G71_AA	-0.086	-1.345	2.936	-0.674	2.48	29.475	-3.097	0.043	2.817	4.863	1.322	29.584
1	22	AA_C11U12:A23G24_AA	-0.281	-1.204	3.261	-1.155	7.295	32.327	-3.289	0.306	2.934	12.892	2.041	33.138
1	24	AA_C13A14:U8G22_AA	-2.385	-0.296	3.28	-0.326	-5.144	57.862	-0.03	2.439	3.305	-5.305	0.336	58.071
1	1	AA_G1C2:G71C72_AA	-0.675	-2.102	3.342	-5.597	9.233	42.259	-3.696	0.386	2.905	12.562	7.615	43.555
1	3	AA_G3G4:U69C70_AA	0.228	-1.804	2.736	-4.899	8.534	24.05	-5.755	-1.506	1.911	19.469	11.176	25.958
1	4	AA_G4A5:U68U69_AA	-0.22	-1.391	3.253	2.047	3.555	42.953	-2.232	0.496	3.121	4.841	-2.788	43.14
1	18	AA_G42G43:C27C28_AA	-0.082	-1.515	3.277	1.454	5.735	36.174	-3.171	0.323	3.005	9.161	-2.322	36.639
1	19	AA_G43A44:M2G26C27_AA	-0.675	-1.092	3.412	5.653	6.026	38.404	-2.347	1.682	3.087	9.034	-8.474	39.25
1	10	AA_G51U52:A62C63_AA	0.264	-1.309	3.192	-0.992	3.38	28.739	-3.329	-0.737	3.011	6.777	1.99	28.95
1	12	AA_G535MU54:1MA58C61_AA	-2.067	-2.577	3.179	0.42	-3.959	91.352	-1.724	1.452	3.257	-2.766	-0.294	91.419
1	15	AA_PSU395MC40:G30A31_AA	0.005	-1.414	3.076	-0.499	7.122	38.748	-2.861	-0.062	2.783	10.625	0.745	39.376
1	6	AA_U6U7:A66A67_AA	-0.186	-1.258	3.078	1.994	9.787	34.681	-3.268	0.552	2.623	16.011	-3.262	36.048
1	7	AA_U75MC49:G65A66_AA	-0.461	-2.061	3.259	0.685	3.485	34.275	-4.003	0.881	3.032	5.893	-1.158	34.453
1	23	AA_U12C13:G22A23_AA	1.734	-2.071	2.848	5.682	1.04	27.192	-4.542	-2.364	3.06	2.18	-11.915	27.788
1	17	AA_U41G42:C28A29_AA	-0.302	-1.779	3.023	-0.136	7.76	26.076	-5.437	0.613	2.405	16.732	0.294	27.187
1	9	AA_U50G51:C63A64_AA	0.267	-1.43	3.335	0.966	4.892	31.549	-3.476	-0.313	3.091	8.927	-1.762	31.931
1	11	AA_U52G53:C61A62_AA	0.979	-1.975	3.373	2.047	7.784	33.723	-4.484	-1.337	2.912	13.185	-3.468	34.643

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.