1EXY: Base Pair Morphology Step Parameters

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NDB ID: 1EXY PDB ID: 1EXY

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	11	AA_A11C12:G17U18_AA	1.094	-0.602	2.919	-3.945	4.316	42.904	-1.182	-1.818	2.743	5.868	5.363	43.282
1	4	AA_C4G5:C28G29_AA	1.181	-2.448	3.168	0.104	30.819	24.861	-5.936	-1.744	0.141	52.011	-0.175	39.406
1	6	AA_C6C7:G24G25_AA	0.092	-2.094	2.411	19.789	-3.137	15.73	-4.029	4.382	1.827	-8.179	-51.593	25.424
1	7	AA_C7G8:C23G24_AA	0.436	-1.557	4.168	-2.963	8.121	36.01	-3.785	-1.173	3.696	12.908	4.71	36.999
1	12	AA_C12G13:A16G17_AA	-0.836	-0.972	2.983	1.844	7.561	64.652	-1.186	0.846	2.845	7.043	-1.718	65.068
1	1	AA_G1G2:U31C32_AA	0.465	-1.384	2.522	-9.908	2.002	24.327	-3.432	-2.958	2.058	4.509	22.32	26.315
1	2	AA_G2G3:C30U31_AA	-0.162	-1.9	3.392	-0.258	12.74	38.866	-4.058	0.205	2.667	18.549	0.375	40.825
1	3	AA_G3C4:G29C30_AA	-0.376	-1.08	3.099	0.986	8.336	42.471	-2.212	0.598	2.839	11.374	-1.345	43.255
1	5	AA_G5C6:G25C28_AA	6.064	0.389	4.383	0.5	-40.005	77.01	1.546	-4.458	3.903	-30.314	-0.379	85.328
1	8	AA_G8G9:C20C23_AA	4.546	-0.054	1.827	-2.33	9.537	69.129	-0.232	-4.02	1.674	8.362	2.043	69.737
1	9	AA_G9U10:A19C20_AA	-0.954	-1.344	3.499	5.782	1.624	38.846	-2.2	2.135	3.272	2.425	-8.631	39.29
1	10	AA_U10A11:U18A19_AA	-0.132	-1.799	3.673	2.385	18.151	28.837	-5.888	0.595	2.176	32.627	-4.287	34.053

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.