1F27: Base Pair Morphology Parameters

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As of 25-May-2022 number of released structures: 12098

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NDB ID: DR0005 PDB ID: 1F27

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_A3:U20_A	0.096	-0.149	0.064	6.292	-11.254	-2.21
1	2	A_C4:G19_A	0.297	-0.158	-0.032	10.904	-18.797	3.054
1	3	A_C5:G18_A	0.145	-0.131	-0.151	5.289	-12.611	-0.352
1	4	A_G6:C17_A	0.043	-0.163	0.075	3.091	-5.58	-1.116
1	5	A_U7:A16_A	0.2	-0.063	-0.37	18.693	1.315	9.522
1	8	B_C29:G13_A	0.213	-0.105	-0.01	9.759	-16.803	0.558
1	9	B_C30:G12_A	0.1	-0.168	0.019	2.293	-12.85	0.939
1	11	B_C32:G10_A	0.273	-0.178	0.066	4.818	-9.783	2.767
1	6	B_G27:C15_A	-0.258	-0.122	0.158	12.7	-4.6	1.995
1	7	B_U28:A14_A	0.001	-0.111	0.001	10.548	-10.69	-0.309
1	10	B_U31:A11_A	0.167	-0.348	0.21	0.727	-10.9	-0.636

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.