A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID: DR0005  PDB ID: 1F27 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_A3:U20_A0.096-0.1490.0646.292-11.254-2.21
12A_C4:G19_A0.297-0.158-0.03210.904-18.7973.054
13A_C5:G18_A0.145-0.131-0.1515.289-12.611-0.352
14A_G6:C17_A0.043-0.1630.0753.091-5.58-1.116
15A_U7:A16_A0.2-0.063-0.3718.6931.3159.522
18B_C29:G13_A0.213-0.105-0.019.759-16.8030.558
19B_C30:G12_A0.1-0.1680.0192.293-12.850.939
111B_C32:G10_A0.273-0.1780.0664.818-9.7832.767
16B_G27:C15_A-0.258-0.1220.15812.7-4.61.995
17B_U28:A14_A0.001-0.1110.00110.548-10.69-0.309
110B_U31:A11_A0.167-0.3480.210.727-10.9-0.636

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.