1F27: Base Pair Morphology Step Parameters

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NDB ID: DR0005 PDB ID: 1F27

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	AA_A3C4:G19U20_AA	0.88	-1.265	3.081	1.4	4.949	33.929	-2.859	-1.291	2.906	8.421	-2.382	34.305
1	2	AA_C4C5:G18G19_AA	-0.669	-1.774	3.359	-0.881	9.307	30.853	-4.78	1.057	2.739	17.011	1.61	32.206
1	3	AA_C5G6:C17G18_AA	-0.309	-1.692	3.269	-2.047	11.476	27.461	-5.457	0.215	2.4	22.909	4.086	29.789
1	4	AA_G6U7:A16C17_AA	0.735	-1.15	3.118	2.109	12.521	22.924	-5.524	-1.121	2.253	28.838	-4.857	26.165
1	5	AB_U7G27:C15A16_AA	-2.765	0.145	3.325	-12.663	7.187	43.088	-0.538	2.305	3.923	9.469	16.683	45.37
1	8	BB_C29C30:G12G13_AA	-0.758	-2.137	3.302	-2.841	10.494	28.182	-6.047	0.931	2.431	20.607	5.578	30.166
1	9	BB_C30U31:A11G12_AA	-0.629	-1.616	3.236	-3.391	8.545	30.043	-4.487	0.567	2.737	16.018	6.358	31.387
1	6	BB_G27U28:A14C15_AA	-0.543	-0.867	3.37	-2.28	4.883	31.232	-2.503	0.568	3.231	8.986	4.195	31.682
1	7	BB_U28C29:G13A14_AA	0.521	-1.667	3.256	0.238	3.748	34.894	-3.309	-0.83	3.069	6.227	-0.395	35.089
1	10	BB_U31C32:G10A11_AA	0.568	-1.455	3.13	2.457	3.731	32.191	-3.213	-0.612	2.981	6.688	-4.405	32.491

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.