A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
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NDB ID: PD0168  PDB ID: 1F4R 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12D_DA2:DT24_E-0.041-0.193-0.219-14.608-8.6168.569
14D_DA4:DT22_E-0.1090.0740.2350.769-21.4192.937
13D_DC3:DG23_E0.1830.1230.018-2.168-8.9665.348
110D_DC11:DG15_E0.611-0.33-1.01920.7633.571-11.997
11D_DG1:DC25_E-0.379-0.202-1.112-21.5257.994-5.097
16D_DG6:DC20_E-0.146-0.0530.3312.3693.8962.736
19D_DG10:DC16_E-0.372-0.111-0.1727.4725.9532.579
15D_DT5:DA21_E0.295-0.098-0.0324.273-15.8681.26
17D_DT8:DA18_E-0.304-0.0720.228-1.682-15.392.497
18D_DT9:DA17_E-0.0650.1650.144-0.035-18.1440.183

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.