A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 1F79  PDB ID: 1F79 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U25_A0.226-0.191-0.391.431-23.513-4.414
14A_A4:U24_A-0.012-0.162-0.7693.15-11.641-1.916
17A_C8:G21_A0.015-0.741-1.236-16.298.535-4.331
111A_C12:G17_A0.473-0.2380.097-9.134-10.447-1.763
11A_G1:C27_A0.009-0.332-0.37346.8618.994-1.213
12A_G2:C26_A-0.133-0.2070.535.008-17.504-8.054
15A_G5:C23_A-0.172-0.207-0.226-12.815-30.554-2.275
18A_G9:C20_A-0.224-0.3051.04416.8475.673-2.581
19A_G10:C19_A-0.421-0.524-0.944-1.307-24.1019.873
16A_U6:G22_A2.409-0.4150.393-8.103-1.4841.317
110A_U11:A18_A-0.081-0.499-1.2690.741-17.846-0.041
112A_U13:G16_A1.139-5.278-1.43238.12-12.862-91.139

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.