1F7F: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 1F7F PDB ID: 1F7F

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A3:U25_A	0.025	-0.045	-0.085	2.536	-22.421	-5.25
1	4	A_A4:U24_A	-0.082	-0.038	-0.403	4.249	-3.173	-3.614
1	6	A_C7:G22_A	-0.126	-0.019	0.342	-0.721	15.835	-1.827
1	7	A_C8:G21_A	-0.053	-0.156	0.518	-25.083	4.692	-8.725
1	11	A_C12:G17_A	0.258	-0.594	1.892	-30.222	18.587	-2.639
1	1	A_G1:C27_A	-0.05	-0.169	-0.046	58.061	10.77	-0.917
1	2	A_G2:C26_A	-0.207	-0.263	0.985	25.368	-5.327	-8.334
1	5	A_G5:C23_A	-0.022	-0.419	-0.803	9.371	-2.949	-6.42
1	8	A_G9:C20_A	-0.197	-0.175	-0.226	0.12	9.008	-3.276
1	9	A_G10:C19_A	-0.243	-0.429	-0.625	10.614	-19.732	6.129
1	10	A_U11:A18_A	-0.248	0.012	-0.628	10.525	-5.001	-3.136
1	12	A_U13:G16_A	1.234	-5.453	0.241	37.84	8.56	-64.276

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.