A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 1F7F  PDB ID: 1F7F 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U25_A0.025-0.045-0.0852.536-22.421-5.25
14A_A4:U24_A-0.082-0.038-0.4034.249-3.173-3.614
16A_C7:G22_A-0.126-0.0190.342-0.72115.835-1.827
17A_C8:G21_A-0.053-0.1560.518-25.0834.692-8.725
111A_C12:G17_A0.258-0.5941.892-30.22218.587-2.639
11A_G1:C27_A-0.05-0.169-0.04658.06110.77-0.917
12A_G2:C26_A-0.207-0.2630.98525.368-5.327-8.334
15A_G5:C23_A-0.022-0.419-0.8039.371-2.949-6.42
18A_G9:C20_A-0.197-0.175-0.2260.129.008-3.276
19A_G10:C19_A-0.243-0.429-0.62510.614-19.7326.129
110A_U11:A18_A-0.2480.012-0.62810.525-5.001-3.136
112A_U13:G16_A1.234-5.4530.24137.848.56-64.276

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.