1F7V: Base Pair Morphology Step Parameters

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NDB ID: PR0031 PDB ID: 1F7V

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	14	BB_2MG910C911:G924C925_BB	-0.646	-2.191	3.412	-0.023	4.872	40.243	-3.71	0.93	3.137	7.05	0.033	40.525
1	8	BB_5MC949C950:G964G965_BB	-0.476	-2.048	3.496	-4.126	7.437	30.986	-5.048	0.115	2.974	13.601	7.546	32.104
1	13	BB_5MU954PSU955:G9171MA958_BB	1.88	-2.028	3.81	7.232	5.281	36.95	-3.909	-1.802	3.783	8.185	-11.21	37.983
1	18	BB_A914A915:U948U908_BB	0.748	-2.67	2.991	2.66	12.611	-79.571	1.748	0.647	3.293	-9.794	2.066	-80.437
1	10	BB_A951G952:C962U963_BB	1.242	-1.718	3.163	0.628	7.182	22.587	-6.308	-2.839	2.535	17.765	-1.555	23.695
1	3	BB_C903C904:G969G970_BB	-0.45	-1.874	3.245	-1.147	6.786	31.754	-4.465	0.617	2.81	12.222	2.066	32.472
1	4	BB_C904U905:G968G969_BB	-0.135	-1.351	3.338	1.075	5.277	38.929	-2.633	0.328	3.131	7.872	-1.603	39.285
1	6	BB_C906G907:C966G967_BB	-0.28	-1.444	3.06	1.44	15.901	28.86	-4.797	0.699	1.998	29.249	-2.648	32.9
1	15	BB_C911C912:G923G924_BB	-0.537	-2.142	3.312	-0.325	4.559	30.455	-4.894	0.949	2.973	8.617	0.615	30.788
1	16	BB_C912C913:C922G923_BB	0.474	-1.326	2.995	1.936	4.412	39.267	-2.425	-0.496	2.855	6.535	-2.868	39.55
1	17	BB_C913A914:U908C922_BB	-1.566	-1.58	3.376	-3.859	-2.606	56.248	-1.516	1.426	3.531	-2.759	4.085	56.424
1	20	BB_C928U929:A941G942_BB	0.002	-2.119	3.495	-2.652	12.56	29.133	-6.037	-0.461	2.391	23.579	4.978	31.78
1	9	BB_C950A951:U963G964_BB	-0.771	-1.586	3.14	3.774	11.225	30.786	-4.454	1.917	2.327	20.229	-6.802	32.934
1	7	BB_G9075MC949:G965C966_BB	-0.581	-1.067	3.093	4.054	8.29	41.111	-2.263	1.19	2.77	11.629	-5.687	42.09
1	22	BB_G930G931:C939C940_BB	-0.008	-2.344	3.108	-0.17	4.346	26.873	-5.956	-0.022	2.702	9.274	0.363	27.216
1	11	BB_G952G953:C961C962_BB	1.023	-2.057	3.61	1.221	6.111	35.068	-4.304	-1.486	3.249	10.044	-2.006	35.6
1	12	BB_G9535MU954:1MA958C961_BB	-3.034	-2.28	3.091	2.926	-2.973	90.102	-1.553	2.198	3.07	-2.099	-2.066	90.178
1	1	BB_PSU901U902:A971A972_BB	-0.158	-1.617	3.448	-8.065	5.741	40.267	-2.916	-0.662	3.171	8.19	11.505	41.417
1	19	BB_PSU927C928:G942A943_BB	-0.095	-2.236	3.482	-0.031	9.753	36.279	-4.725	0.144	2.808	15.325	0.048	37.524
1	2	BB_U902C903:G970A971_BB	-0.325	-1.593	3.043	0.374	-0.216	31.223	-2.921	0.669	3.049	-0.402	-0.695	31.226
1	5	BB_U905C906:G967G968_BB	0.031	-1.609	2.986	0.412	11.287	26.603	-5.281	0.013	2.139	23.243	-0.848	28.861
1	21	BB_U929G930:C940A941_BB	0.548	-1.921	3.253	5.281	5.219	30.038	-4.573	-0.046	2.937	9.88	-9.998	30.921

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.