A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 1F84  PDB ID: 1F84 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_A6:A24_A5.506-5.263-0.41411.989-2.356179.451
17A_A9:G22_A-6.405-4.16-0.563-0.341-3.235-5.326
12A_C3:G27_A-0.451-0.1770.4812.628-24.032-3.312
13A_C4:G26_A-0.103-0.303-0.307-0.735-30.035-0.306
11A_G2:C28_A0.295-0.3120.411-0.191-25.787-4.23
14A_G5:A25_A6.777-5.7860.320.201-16.574-15.806
18A_G10:C21_A-0.001-0.357-0.69-15.161-21.1782.045
110A_G12:C19_A0.738-0.578-2.032-26.0565.941-14.342
16A_U8:A23_A3.558-1.258-0.75920.493-15.529-104.471
19A_U11:G20_A1.617-0.460.691-20.178-22.682-4.911
111A_U14:G17_A-0.946-7.2290.69449.88526.509-89.389

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.