A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 1F9L  PDB ID: 1F9L 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_A5:G18_A0.0431.123-0.872-6.1050.51-23.184
16A_A6:G17_A0.1071.247-0.5381.811-5.291-22.412
13A_C3:G20_A0.197-0.282-0.83710.066-17.7153.509
19A_C9:G14_A0.064-0.1720.00820.29-5.584-3.456
11A_G1:C22_A-0.014-0.146-0.31729.66820.355-5.981
12A_G2:C21_A-0.43-0.3960.6762.52326.1627.136
14A_G4:C19_A0.382-0.4270.881-3.547-17.763-18.929
17A_G7:U16_A-2.147-0.37-0.501-4.341-9.111-5.401
110A_G10:A13_A7.104-5.355-1.17631.3877.842-63.956
18A_U8:A15_A0.097-0.044-0.3532.072-0.802-6.032

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.