1FL8: Base Pair Morphology Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: 1FL8 PDB ID: 1FL8

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A29:U41_A	0.82	-0.092	0.187	0.13	-18.295	-3.002
1	5	A_A31:PSU39_A	1.408	-0.158	0.206	-20.718	-25.768	-18.979
1	2	A_C28:G42_A	-0.727	-0.17	0.228	-2.299	-21.698	-3.618
1	4	A_G30:C40_A	0.64	-0.168	-0.447	-12.282	-25.398	-1.543
1	1	A_U27:A43_A	0.651	0.183	-0.767	-1.839	-11.71	3.402

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.