1FMN: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 1FMN PDB ID: 1FMN

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	8	A_A8:G28_A	-0.844	1.879	-0.1	-4.942	-15.449	-15.855
1	11	A_A13:G24_A	-7.153	-4.748	0.127	2.646	-1.647	-17.889
1	3	A_C3:G33_A	0.703	-0.303	-0.592	11.338	30.081	-10.672
1	14	A_C16:G21_A	0.171	-0.059	0.201	7.135	1.265	-9.153
1	1	A_G1:C35_A	-0.137	0.075	0.112	4.882	-5.95	-3.993
1	2	A_G2:C34_A	-0.493	-0.39	-0.875	-24.42	27.826	-13.141
1	4	A_G4:C32_A	0.134	0.073	0.379	-18.046	-2.942	-3.337
1	6	A_G6:C30_A	0.39	-0.041	0.114	-16.585	-25.151	-11.173
1	9	A_G9:G27_A	3.953	1.498	-0.265	-9.685	-5.766	-22.641
1	13	A_G15:C22_A	0.028	0.085	-0.059	-0.88	-3.008	-4.117
1	5	A_U5:A31_A	0.14	0.063	0.079	-2.295	-7.344	-13.896
1	7	A_U7:A29_A	0.218	0.054	0.722	-3.05	-2.744	-9.78
1	10	A_U12:A25_A	4.377	-1.773	0.042	7.433	-8.704	-104.839
1	12	A_U14:A23_A	-0.423	0.046	0.026	8.511	-1.14	-2.975
1	15	A_U17:G20_A	0.568	-6.693	1.049	0.946	-23.886	-100.635

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.