A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 1FYO  PDB ID: 1FYO 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18A_A9:U18_A0.215-0.3761.2849.176-11.114-10.898
13A_C3:G25_A0.478-0.382-0.32813.771-14.868-3.873
16A_C6:G22_A0.447-0.606-0.7-12.313-6.295-0.269
17A_C8:G19_A0.244-0.7681.329-9.376-14.682-14.271
19A_C10:G17_A0.328-0.4180.68314.48-9.947-5.277
110A_C11:G16_A0.595-0.361-0.71826.173-19.205-1.8
11A_G1:C27_A-0.346-0.5850.9314.468-9.505-10.19
12A_G2:C26_A-0.48-0.395-0.105-7.1365.946-5.306
14A_G4:C24_A-0.456-0.4490.3633.171-21.376-4.379
15A_U5:U23_A2.921-1.9050.4691.432-14.1943.734
111A_U12:G15_A2.259-4.2550.119-13.698-34.618-78.916

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.