1FYO: Base Pair Morphology Step Parameters

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NDB ID: 1FYO PDB ID: 1FYO

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	AA_A9C10:G17U18_AA	0.361	-1.511	3.238	2.325	-9.783	35.226	-0.985	-0.237	3.534	-15.773	-3.748	36.589
1	3	AA_C3G4:C24G25_AA	0.552	-1.54	3.235	-3.804	12.14	31.209	-4.438	-1.511	2.405	21.482	6.731	33.642
1	6	AA_C8A9:U18G19_AA	-0.282	-1.611	2.348	-0.368	-9.451	32.558	-1.566	0.438	2.7	-16.431	0.639	33.868
1	8	AA_C10C11:G16G17_AA	0.282	-1.19	2.927	7.776	-6.38	31.129	-1.074	0.767	3.084	-11.518	-14.038	32.676
1	9	AA_C11U12:G15G16_AA	-0.2	-1.409	3.504	10.778	15.426	93.716	-1.241	0.336	3.271	10.489	-7.328	95.152
1	1	AA_G1G2:C26C27_AA	3.634	-1.123	-0.501	-3.528	163.23	98.569	-0.257	-1.818	-1.16	83.62	1.807	169.108
1	2	AA_G2C3:G25C26_AA	0.344	-0.838	2.809	2.781	3.847	35.626	-1.826	-0.221	2.725	6.253	-4.52	35.931
1	4	AA_G4U5:U23C24_AA	0.357	-1.062	3.242	-2.553	-5.152	51.399	-0.868	-0.582	3.307	-5.918	2.933	51.698
1	5	AA_U5C6:G22U23_AA	-0.087	-1.866	3.325	15.613	1.631	33.372	-3.18	2.271	2.91	2.664	-25.509	36.784

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.