A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Sep-2019 number of released structures: 10386
Search for released structures

NDB ID: RR0019  PDB ID: 1G1X 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11D_A582:U759_E-0.1490.092-1.538-36.553-23.181-19.859
12D_A583:U758_E-0.3560.522-0.425-33.33719.187-2.866
16D_A594:G591_D-6.62-5.0731.447-15.014-2.416-10.648
112D_A655:U751_E-0.1320.1550.0813.334-4.1495.912
120D_A663:G742_E-0.161.7250.16-4.3180.755-20.948
15D_C586:G755_E0.362-0.1640.2457.581-8.6934.887
19D_C651:G588_D0.595-0.142-0.088-6.865-14.3455.67
113D_C656:G750_E0.1630.0420.01217.079-14.2651.675
13D_G584:U757_E-2.256-0.846-0.1-9.65-16.031-1.843
14D_G585:C756_E-0.2-0.272-0.0335.242-9.895-1.634
17D_G649:C590_D-0.174-0.10.187.59.4284.124
18D_G650:C589_D-0.326-0.41-0.621-12.053-23.1512.771
111D_G654:C754_E-0.287-0.309-0.6520.561-2.840.217
114D_G657:C749_E0.224-0.053-0.041.723-1.674.866
115D_G658:C747_E-0.733-0.2550.2365.208-18.754-2.835
117D_G660:C745_E0.4390.0630.436-3.129-10.8644.632
118D_G661:C744_E-0.508-0.1040.124-4.77-14.7855.643
119D_G662:U743_E-1.696-0.3450.194-11.317-11.5840.033
121D_G664:G741_E2.1891.459-0.2047.920.657-24.889
122D_G666:U740_E-2.138-0.458-0.559-9.814-2.2691.909
123D_G667:C739_E-0.185-0.112-0.365-8.967-9.5742.524
124D_G668:C738_E-0.731-0.1340.028-13.149-16.6972.335
126D_G670:C736_E-0.399-0.4340.243-2.182-4.7311.868
127D_G671:C735_E0.103-0.4720.229-9.343-9.054-3.522
129D_G673:C717_E-0.920.1631.47918.4454.47414.1
116D_U659:A746_E0.694-0.215-0.81110.373-32.6474.793
125D_U669:A737_E-0.464-0.1150.356-10.502-12.149-2.957
128D_U672:G734_E2.772-0.393-0.13-1.844-1.4410.348
130E_A722:A733_E-0.976-1.9640.371-17.0933.733171.598
110E_A753:U652_D-3.989-2.2920.855-0.1196.523-97.772
133E_C726:G731_E0.428-0.257-0.0820.695-2.265-2.156
131E_G724:A665_D-0.4154.676-0.58-1.134.386-98.299
132E_G725:C732_E-0.058-0.125-0.311-5.336-8.5745.247
134E_G727:G730_E7.702-4.803-0.05620.58212.508-41.252
135I_A582:U759_J0.4920.3140.008-24.46435.012-11.605
136I_A583:U758_J-0.2830.0180.143-3.477-9.63310.403
140I_A594:G591_I-7.496-3.5281.246-6.953-23.142-79.448
146I_A655:U751_J0.0460.0090.35911.238-9.4383.064
154I_A663:G742_J-0.31.8110.036-4.902-0.051-21.95
139I_C586:G755_J0.453-0.3060.0399.91-7.6162.217
143I_C651:G588_I-0.7311.4530.334-15.588-0.70340.692
147I_C656:G750_J0.103-0.1910.02216.441-11.743-0.22
137I_G584:U757_J-1.75-0.250.1383.102-6.1840.193
138I_G585:C756_J-0.233-0.1390.5025.044-6.6755.625
141I_G649:C590_I0.516-0.5350.51815.24-3.464-4.543
142I_G650:C589_I-1.536-0.482-0.240.526-5.9844.627
145I_G654:C754_J0.115-0.2520.19510.32216.421-4.51
148I_G657:C749_J0.304-0.055-0.133-1.788-1.5110.641
149I_G658:C747_J-0.2860.0280.3092.295-11.631-6.47
151I_G660:C745_J-0.167-0.101-0.005-0.229-15.0547.954
152I_G661:C744_J-0.002-0.025-0.334-17.254-20.4941.249
153I_G662:U743_J-2.119-0.275-0.173-11.332-7.266-1.646
155I_G664:G741_J2.2451.443-0.1428.2510.015-22.093
156I_G666:U740_J-2.578-0.86-0.783-7.233-7.196-2.51
157I_G667:C739_J-0.534-0.121-0.435-5.039-12.8614.323
158I_G668:C738_J-0.046-0.2070.134-10.603-10.0-2.374
160I_G670:C736_J-0.2880.0480.2911.72-13.3894.011
161I_G671:C735_J0.158-0.4170.306-6.004-11.141-4.28
163I_G673:C717_J1.221-0.2160.52111.871-5.664-11.692
150I_U659:A746_J-0.215-0.188-0.224.228-21.5124.663
159I_U669:A737_J-0.281-0.0280.161-7.833-10.9160.866
162I_U672:G734_J2.346-0.7080.149-2.145-11.783-0.528
164J_A722:A733_J-1.163-0.7780.434-12.4295.346170.495
144J_A753:U652_I-4.449-3.33-0.715-6.518-13.11-94.15
167J_C726:G731_J0.131-0.2150.477-6.514-4.3531.694
165J_G724:A665_I-0.084.635-0.076-4.157-3.819-93.145
166J_G725:C732_J-0.208-0.169-0.207-7.68-3.3010.932
168J_G727:G730_J7.863-4.916-0.06124.51114.029-47.963

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.