A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0035  PDB ID: 1G59 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17B_A507:U566_B0.8560.208-0.009-10.568-2.5053.71
126B_A514:U508_B-3.739-1.9490.8836.13620.116-95.407
115B_A538:C532_B-5.03-0.8121.22716.413.1395.573
121B_A544:G526_B0.1861.453-0.062-18.461-17.129-7.532
13B_C503:G570_B0.175-0.087-0.48217.837-7.106-1.356
14B_C504:G569_B0.331-0.19-0.6549.979-0.7721.235
15B_C505:G568_B0.185-0.202-0.5244.4684.432-5.5
16B_C506:G567_B0.779-0.138-0.12-13.6463.3195.13
124B_C512:G523_B-0.014-0.095-0.3960.4410.8742.752
118B_C541:G529_B-0.028-0.369-0.2077.772-5.2340.281
119B_C542:G528_B0.436-0.456-0.4694.282-4.2481.183
11B_G501:C572_B-0.3870.0060.058-2.498-15.506-0.438
12B_G502:U571_B-2.077-0.2150.21715.581-8.71.872
122B_G510:C525_B-0.308-0.0420.0127.4063.4032.104
127B_G515:C548_B0.0883.74-0.671-2.6291.104162.659
128B_G518:C556_B-0.6530.015-0.02813.402-10.9612.586
116B_G539:C531_B-0.192-0.0810.12412.65-8.0615.051
117B_G540:C530_B-0.359-0.075-0.525-2.661-8.0638.558
120B_G543:C527_B-0.094-0.228-0.218-19.943-15.6460.264
18B_G549:C565_B-0.428-0.031-0.483-4.2482.7257.589
19B_G550:C564_B-0.6540.003-0.799-9.5627.2512.084
110B_G551:C563_B-0.302-0.39-1.157-19.2053.1120.756
111B_G552:C562_B0.0230.122-0.684-8.3597.6719.137
112B_G553:C561_B-1.028-0.1270.093-1.16411.6513.262
123B_U511:A524_B-0.243-0.0280.347-7.684-4.03412.338
125B_U513:G522_B2.386-0.594-0.3453.0444.2157.438
113B_U554:A558_B4.584-2.6960.368-4.60510.134-85.279
114B_U555:G517_B0.521-5.0330.36917.3055.015-93.988
135D_A507:U566_D0.8370.1810.136-8.3320.9213.369
154D_A514:U508_D-3.781-1.9861.0068.03220.404-95.392
143D_A538:C532_D-5.007-0.8191.40416.47111.7774.86
149D_A544:G526_D0.2981.453-0.038-19.15-17.234-8.625
131D_C503:G570_D0.086-0.072-0.67921.446-5.132-0.632
132D_C504:G569_D0.354-0.186-0.7379.6991.880.391
133D_C505:G568_D0.165-0.219-0.6384.5886.848-6.152
134D_C506:G567_D0.723-0.139-0.274-12.2113.595.02
152D_C512:G523_D-0.06-0.081-0.5162.2271.1292.887
146D_C541:G529_D-0.005-0.399-0.4098.725-5.619-0.28
147D_C542:G528_D0.349-0.493-0.5143.592-5.3471.143
129D_G501:C572_D0.298-0.1910.6699.308-6.307-2.778
130D_G502:U571_D-1.617-0.5260.08912.421-1.554-1.936
150D_G510:C525_D-0.272-0.0160.0528.6135.6273.296
155D_G515:C548_D0.0853.699-0.6110.1012.127162.212
156D_G518:C556_D-0.675-0.162-1.233-7.1230.370.007
144D_G539:C531_D-0.267-0.1360.31612.289-9.0493.634
145D_G540:C530_D-0.315-0.026-0.545-4.726-9.0568.206
148D_G543:C527_D-0.088-0.25-0.1-17.396-16.465-0.973
136D_G549:C565_D-0.698-0.055-0.31-2.8252.4066.785
137D_G550:C564_D-0.893-0.133-0.889-10.7118.0191.698
138D_G551:C563_D-0.565-0.408-1.312-21.5633.493-0.188
139D_G552:C562_D-0.1470.308-0.865-9.52113.3688.004
140D_G553:C561_D-0.9770.063-0.48-7.66913.2982.087
151D_U511:A524_D-0.128-0.0220.036-0.645-4.412.526
153D_U513:G522_D2.442-0.587-0.1542.2094.1637.182
141D_U554:A558_D4.159-2.598-0.417-9.89210.536-85.325
142D_U555:G517_D0.864-5.5690.03520.0614.981-92.443

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.