A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0035  PDB ID: 1G59 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
17BB_A507G549:C565U566_BB-2.195-1.2032.9571.2540.04845.91-1.5462.912.8980.062-1.60745.926
125BB_A514G515:C548U508_BB1.559-2.5513.741.17221.184-76.1091.2871.2714.204-16.8750.934-78.578
114BB_A538G539:C531C532_BB-0.15-0.9193.2822.6110.45650.917-1.7330.3423.0412.007-2.99751.971
120BB_A544G510:C525G526_BB-3.018-1.8823.12415.07515.04556.379-2.4693.6071.82415.333-15.36359.958
13BB_C503C504:G569G570_BB0.417-1.6213.4583.3167.07532.379-4.025-0.1683.07212.462-5.8433.284
14BB_C504C505:G568G569_BB-0.475-1.483.546-0.1960.72830.823-2.9360.8523.5141.3690.36930.832
15BB_C505C506:G567G568_BB0.669-1.7933.6250.1739.94734.497-4.389-1.0613.01216.357-0.28435.861
16BB_C506A507:U566G567_BB-0.269-1.3162.8844.2728.64232.407-3.4221.0352.4115.074-7.45233.774
123BB_C512U513:G522G523_BB1.65-2.0833.0930.3536.97727.008-5.772-3.3512.50714.63-0.74127.88
117BB_C541C542:G528G529_BB0.104-1.8863.2492.6296.3333.178-4.20.2212.85110.941-4.54433.859
118BB_C542G543:C527G528_BB0.145-1.8633.8532.45914.56628.632-6.1060.2012.62527.279-4.60532.147
11BB_G501G502:U571C572_BB-0.534-1.012.405-9.3928.25434.259-2.447-0.092.17913.46815.32536.405
12BB_G502C503:G570U571_BB-0.234-0.8213.2322.8790.23541.828-1.1710.6223.2050.329-4.02741.924
121BB_G510U511:A524C525_BB0.401-1.8363.719-3.1475.74336.264-3.756-1.1013.3549.1355.00636.831
115BB_G539G540:C530C531_BB-0.208-1.4383.5822.1529.48532.257-4.0820.7223.0316.607-3.76733.654
116BB_G540C541:G529C530_BB-0.284-1.1573.014-4.4293.36634.542-2.387-0.1362.9055.6247.39934.973
119BB_G543A544:G526C527_BB-0.755-1.5163.0442.1395.7436.348-3.0921.4532.7339.121-3.39936.843
18BB_G549G550:C564C565_BB-0.311-1.823.4853.6982.2230.97-3.8161.3053.2914.132-6.88331.261
19BB_G550G551:C563C564_BB0.258-1.6533.4673.90612.90132.498-4.6210.1432.65321.914-6.63535.112
110BB_G551G552:C562C563_BB0.687-1.2722.966-3.4312.8829.34-3.015-1.9742.7355.6456.72529.673
111BB_G552G553:C561C562_BB1.286-2.0132.694-4.6282.42325.527-4.972-3.8172.2325.41110.33626.048
112BB_G553U554:A558C561_BB-1.374-2.3373.3215.4876.038100.105-1.6140.9793.1573.933-3.574100.348
122BB_U511C512:G523A524_BB-0.607-1.5372.9425.7436.4134.56-3.3041.6992.49610.588-9.48535.584
124BB_U513A514:U508G522_BB-1.122-1.0343.091.64-1.19769.244-0.8691.0433.082-1.054-1.44369.27
113BB_U554U555:G517A558_BB1.659-1.3923.0447.0931.64343.128-2.021-1.5753.2122.216-9.56743.709
132DD_A507G549:C565U566_DD-2.077-1.352.9282.551-1.89745.172-1.6032.8992.865-2.467-3.31645.277
150DD_A514G515:C548U508_DD1.53-2.6343.7521.87920.092-75.841.3931.284.205-16.0781.503-78.087
139DD_A538G539:C531C532_DD-0.094-0.9743.333.8488.82250.641-1.7190.3693.11610.208-4.45251.489
145DD_A544G510:C525G526_DD-2.982-1.9123.09414.80115.34756.47-2.53.5481.80315.618-15.06260.05
128DD_C503C504:G569G570_DD0.379-1.5873.5222.4768.47733.316-4.032-0.2463.05814.472-4.22734.434
129DD_C504C505:G568G569_DD-0.503-1.5493.510.142.13930.292-3.4120.993.3934.087-0.26730.366
130DD_C505C506:G567G568_DD0.753-1.7543.6370.8188.25134.273-4.191-1.1153.1613.754-1.36335.232
131DD_C506A507:U566G567_DD-0.189-1.3022.9061.7748.61332.858-3.3820.5622.48314.896-3.06933.983
148DD_C512U513:G522G523_DD1.571-2.0933.124-1.2938.85727.728-5.808-3.3662.28517.92.61329.11
142DD_C541C542:G528G529_DD0.106-1.8523.3232.1188.332.192-4.5460.152.77414.648-3.73733.283
143DD_C542G543:C527G528_DD0.102-1.8433.7731.04714.63228.864-5.9760.0062.56627.245-1.94932.307
126DD_G501G502:U571C572_DD-0.428-1.02.941-2.96512.61735.305-2.9660.3332.47919.994.69837.537
127DD_G502C503:G570U571_DD0.032-0.9953.0554.1983.22938.882-1.8380.4152.9544.823-6.27139.227
146DD_G510U511:A524C525_DD0.347-1.753.556-0.1535.51236.136-3.588-0.5763.2628.8230.24436.541
140DD_G539G540:C530C531_DD-0.096-1.4653.5742.96310.62533.049-4.1120.6242.95818.063-5.03634.792
141DD_G540C541:G529C530_DD-0.248-1.0832.914-2.1953.42434.537-2.2710.1212.8075.7423.68134.768
144DD_G543A544:G526C527_DD-0.742-1.53.1592.3985.14536.758-2.9891.4612.8788.099-3.77437.178
133DD_G549G550:C564C565_DD-0.174-2.0553.4175.4732.94831.307-4.2811.3233.1415.395-10.01931.903
134DD_G550G551:C563C564_DD0.229-1.6983.4654.55612.76432.831-4.6120.2752.65121.477-7.66735.447
135DD_G551G552:C562C563_DD0.649-1.3072.889-4.7253.02628.813-3.133-2.1442.6046.0099.38329.343
136DD_G552G553:C561C562_DD1.224-1.9693.013-1.4852.33826.822-4.751-2.9622.7645.0223.19126.962
137DD_G553U554:A558C561_DD-1.122-2.0823.3646.2969.53298.485-1.5220.8393.156.276-4.14698.974
147DD_U511C512:G523A524_DD-0.556-1.4413.1564.6777.31433.554-3.4451.5882.69212.412-7.93734.628
149DD_U513A514:U508G522_DD-1.162-1.0822.9990.452-2.04368.831-0.8881.0433.019-1.807-0.468.859
138DD_U554U555:G517A558_DD1.782-1.5162.9068.3222.46844.474-2.173-1.633.093.224-10.87245.271

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.