A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: PD0267  PDB ID: 1GM5 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
12X_DA2:DT19_Y120
18X_DA8:DT13_Y120
11X_DC1:DG20_Y119
14X_DC4:DG17_Y119
16X_DC6:DG15_Y119
17X_DC7:DG14_Y119
13X_DG3:DC18_Y119
110X_DG10:DC11_Y00
15X_DT5:DA16_Y10
19X_DT9:DA12_Y120
113Y_DA3:DT7_Z120
112Y_DC2:DG8_Z119
117Y_DC7:DG3_Z119
119Y_DC9:DG1_Z119
111Y_DG1:DC9_Z119
114Y_DG4:DC6_Z119
116Y_DG6:DC4_Z119
115Y_DT5:DA5_Z120
118Y_DT8:DA2_Z120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)