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As of 18-May-2022 number of released structures: 12082
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NDB ID: PD0267  PDB ID: 1GM5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12X_DA2:DT19_Y-0.01-0.4190.8411.613-2.4423.691
18X_DA8:DT13_Y0.0320.232-0.148-13.3953.811-4.627
11X_DC1:DG20_Y0.543-0.33-1.66232.049-17.8114.697
14X_DC4:DG17_Y-0.3730.119-0.61717.4734.344-0.784
16X_DC6:DG15_Y0.0470.3660.868-29.53-1.495-3.113
17X_DC7:DG14_Y-0.3710.0030.445-17.778-1.386-3.112
13X_DG3:DC18_Y0.191-0.2331.40524.5093.9570.527
110X_DG10:DC11_Y0.1183.856-0.731-36.6629.628-82.817
15X_DT5:DA16_Y-1.271-2.1911.037-3.185-7.992-19.278
19X_DT9:DA12_Y-1.1270.0590.324-15.138-3.485-0.727
113Y_DA3:DT7_Z0.357-0.0230.0534.383-10.468-8.478
112Y_DC2:DG8_Z-0.267-0.0171.107-0.366-0.182-2.879
117Y_DC7:DG3_Z-0.264-0.3550.014-2.243-5.5955.158
119Y_DC9:DG1_Z0.393-0.38-0.3116.237-6.694-1.029
111Y_DG1:DC9_Z0.697-0.3331.581.3239.403-1.554
114Y_DG4:DC6_Z-0.145-0.0660.087-1.873-0.807-3.043
116Y_DG6:DC4_Z0.353-0.068-0.0423.516-7.858-7.226
115Y_DT5:DA5_Z0.057-0.3730.179-4.125-6.917-7.393
118Y_DT8:DA2_Z0.183-0.042-0.20810.5225.601-7.585

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.