1GM5: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PD0267 PDB ID: 1GM5

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	XX_DA2DG3:DC18DT19_YY	0.26	-0.101	3.095	0.332	0.468	35.716	-0.229	-0.378	3.096	0.763	-0.541	35.721
1	8	XX_DA8DT9:DA12DT13_YY	-0.104	-0.757	3.489	-3.297	-3.461	25.749	-0.654	-0.74	3.543	-7.682	7.318	26.181
1	1	XX_DC1DA2:DT19DG20_YY	0.607	-0.276	3.86	-13.903	6.427	31.908	-1.54	-3.348	3.217	10.938	23.662	35.307
1	4	XX_DC4DT5:DA16DG17_YY	-0.233	-0.214	4.405	-9.537	11.838	32.122	-2.7	-1.511	3.994	20.052	16.154	35.452
1	6	XX_DC6DC7:DG14DG15_YY	-0.02	-0.364	2.724	4.258	0.393	32.076	-0.711	0.661	2.695	0.708	-7.664	32.353
1	7	XX_DC7DA8:DT13DG14_YY	-0.105	-0.022	3.036	-0.7	9.307	37.55	-1.097	0.078	2.949	14.191	1.068	38.651
1	3	XX_DG3DC4:DG17DC18_YY	0.811	-0.962	3.89	14.615	0.649	29.401	-1.845	1.706	3.835	1.19	-26.806	32.768
1	5	XX_DT5DC6:DG15DA16_YY	0.644	-1.094	3.759	5.096	1.091	42.868	-1.611	-0.296	3.78	1.487	-6.942	43.168
1	9	XX_DT9DG10:DC11DA12_YY	1.535	-0.918	2.57	17.55	18.246	84.646	-0.982	-0.801	2.593	13.295	-12.788	87.661
1	12	YY_DA3DG4:DC6DT7_ZZ	-0.481	-0.765	3.293	-4.336	10.185	34.034	-2.695	0.168	2.986	16.856	7.175	35.738
1	11	YY_DC2DA3:DT7DG8_ZZ	-1.082	-0.634	2.877	1.99	4.513	36.812	-1.513	1.928	2.723	7.107	-3.134	37.13
1	16	YY_DC7DT8:DA2DG3_ZZ	-0.178	0.009	3.183	-0.282	2.16	31.946	-0.363	0.274	3.178	3.918	0.512	32.018
1	10	YY_DG1DC2:DG8DC9_ZZ	-0.399	-0.692	3.386	1.038	-2.218	30.822	-0.851	0.958	3.411	-4.165	-1.95	30.917
1	13	YY_DG4DT5:DA5DC6_ZZ	-0.815	-0.809	3.541	-2.051	-1.225	32.751	-1.201	1.057	3.611	-2.169	3.631	32.836
1	15	YY_DG6DC7:DG3DC4_ZZ	-0.071	-0.74	3.403	-0.344	5.852	29.618	-2.635	0.066	3.201	11.308	0.664	30.18
1	14	YY_DT5DG6:DC4DA5_ZZ	0.588	-0.04	3.215	3.335	2.091	33.777	-0.4	-0.477	3.248	3.583	-5.716	33.999
1	17	YY_DT8DC9:DG1DA2_ZZ	1.545	-0.124	3.309	8.62	7.446	38.858	-1.065	-1.209	3.48	10.91	-12.63	40.431

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.