1GTC: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 1GTC PDB ID: 1GTC

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_DA3:DT6_B	0.036	-0.039	0.185	-7.408	-9.592	-2.834
1	2	A_DC2:DG7_B	0.928	-0.355	0.353	-1.87	-16.029	-1.905
1	8	A_DC8:G1_B	0.131	-0.041	-0.181	-8.452	-8.577	1.127
1	1	A_DG1:DC8_B	-0.05	-0.09	0.545	6.668	-14.544	-3.431
1	4	A_DG4:DC5_B	-0.417	-0.421	1.445	18.472	-3.424	-4.825
1	6	A_DG6:C3_B	0.4	-0.03	0.664	22.264	-6.59	-4.16
1	7	A_DG7:C2_B	-0.437	-0.078	-0.21	6.136	-6.082	-1.959
1	5	A_DT5:A4_B	0.05	0.006	0.198	10.6	-13.855	-0.103

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.