A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 1GTC  PDB ID: 1GTC 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_DA3:DT6_B0.036-0.0390.185-7.408-9.592-2.834
12A_DC2:DG7_B0.928-0.3550.353-1.87-16.029-1.905
18A_DC8:G1_B0.131-0.041-0.181-8.452-8.5771.127
11A_DG1:DC8_B-0.05-0.090.5456.668-14.544-3.431
14A_DG4:DC5_B-0.417-0.4211.44518.472-3.424-4.825
16A_DG6:C3_B0.4-0.030.66422.264-6.59-4.16
17A_DG7:C2_B-0.437-0.078-0.216.136-6.082-1.959
15A_DT5:A4_B0.050.0060.19810.6-13.855-0.103

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.