1GTR: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: PTR003 PDB ID: 1GTR

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	B_A7:U66_B	0.169	-0.148	-0.097	-1.036	-7.858	-4.756
1	25	B_A13:A45_B	1.574	0.863	-0.174	-9.808	13.476	-177.133
1	26	B_A14:A21_B	-6.471	-0.829	0.061	-1.336	-12.141	41.694
1	14	B_A37:U33_B	-6.051	-4.11	-0.209	-6.042	6.212	-41.267
1	9	B_A51:U63_B	-0.329	-0.361	0.432	4.928	-16.733	1.2
1	23	B_C11:G24_B	-0.017	-0.169	-0.069	-4.492	-4.86	0.183
1	24	B_C12:G23_B	0.406	-0.263	-0.012	-2.521	-1.956	-4.307
1	17	B_C40:G30_B	0.708	-0.374	-0.346	4.811	-9.502	0.012
1	18	B_C41:G29_B	0.586	-0.324	-0.024	2.698	-14.926	-2.787
1	21	B_C44:A26_B	3.184	-0.622	0.023	-8.901	-13.602	-15.371
1	7	B_C49:G65_B	0.423	-0.364	-0.182	8.033	-14.82	-3.439
1	1	B_G2:C71_B	-0.261	-0.277	-0.239	-9.306	-0.24	-4.065
1	2	B_G3:C70_B	-0.476	-0.284	-0.092	-2.154	-10.191	0.21
1	3	B_G4:C69_B	-0.035	-0.146	0.073	-5.977	-16.209	-2.198
1	4	B_G5:C68_B	-0.19	-0.211	-0.26	-16.245	-20.778	-2.696
1	22	B_G10:C25_B	-0.353	-0.311	-0.472	-7.441	-8.826	-1.806
1	27	B_G15:C48_B	0.017	3.772	-0.005	4.989	13.928	158.793
1	28	B_G19:C56_B	0.449	-0.136	-0.23	15.753	-10.939	-1.769
1	19	B_G42:C28_B	-0.659	-0.403	-0.12	-5.543	-10.9	-3.35
1	20	B_G43:C27_B	-0.737	-0.437	-0.242	-13.547	-22.506	-1.627
1	8	B_G50:C64_B	-0.991	-0.411	-0.023	-6.321	-14.394	1.824
1	10	B_G52:C62_B	0.171	-0.226	-0.12	-4.38	-11.954	-1.81
1	11	B_G53:C61_B	-0.129	-0.212	-0.261	-16.183	-12.151	-0.346
1	5	B_U6:A67_B	0.421	-0.17	0.499	-13.882	-7.438	3.121
1	15	B_U38:U32_B	-2.679	-0.677	-0.913	11.664	-6.979	-41.504
1	16	B_U39:A31_B	0.033	-0.125	-0.719	15.521	-7.709	-3.614
1	12	B_U54:A58_B	4.663	-2.586	0.572	-2.19	10.196	-97.292
1	13	B_U55:G18_B	0.498	-5.72	0.519	17.113	10.682	-90.221

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.