A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: PTR003  PDB ID: 1GTR 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16B_A7:U66_B0.169-0.148-0.097-1.036-7.858-4.756
125B_A13:A45_B1.5740.863-0.174-9.80813.476-177.133
126B_A14:A21_B-6.471-0.8290.061-1.336-12.14141.694
114B_A37:U33_B-6.051-4.11-0.209-6.0426.212-41.267
19B_A51:U63_B-0.329-0.3610.4324.928-16.7331.2
123B_C11:G24_B-0.017-0.169-0.069-4.492-4.860.183
124B_C12:G23_B0.406-0.263-0.012-2.521-1.956-4.307
117B_C40:G30_B0.708-0.374-0.3464.811-9.5020.012
118B_C41:G29_B0.586-0.324-0.0242.698-14.926-2.787
121B_C44:A26_B3.184-0.6220.023-8.901-13.602-15.371
17B_C49:G65_B0.423-0.364-0.1828.033-14.82-3.439
11B_G2:C71_B-0.261-0.277-0.239-9.306-0.24-4.065
12B_G3:C70_B-0.476-0.284-0.092-2.154-10.1910.21
13B_G4:C69_B-0.035-0.1460.073-5.977-16.209-2.198
14B_G5:C68_B-0.19-0.211-0.26-16.245-20.778-2.696
122B_G10:C25_B-0.353-0.311-0.472-7.441-8.826-1.806
127B_G15:C48_B0.0173.772-0.0054.98913.928158.793
128B_G19:C56_B0.449-0.136-0.2315.753-10.939-1.769
119B_G42:C28_B-0.659-0.403-0.12-5.543-10.9-3.35
120B_G43:C27_B-0.737-0.437-0.242-13.547-22.506-1.627
18B_G50:C64_B-0.991-0.411-0.023-6.321-14.3941.824
110B_G52:C62_B0.171-0.226-0.12-4.38-11.954-1.81
111B_G53:C61_B-0.129-0.212-0.261-16.183-12.151-0.346
15B_U6:A67_B0.421-0.170.499-13.882-7.4383.121
115B_U38:U32_B-2.679-0.677-0.91311.664-6.979-41.504
116B_U39:A31_B0.033-0.125-0.71915.521-7.709-3.614
112B_U54:A58_B4.663-2.5860.572-2.1910.196-97.292
113B_U55:G18_B0.498-5.720.51917.11310.682-90.221

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.