1GUC: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

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NDB ID: 1GUC PDB ID: 1GUC

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_A2:U15_B	-0.092	-0.01	0.164	6.215	0.401	-0.245
1	6	A_C6:G11_B	0.026	-0.108	-0.032	-6.128	-8.236	0.894
1	8	A_C8:G9_B	-0.132	-0.075	0.009	-3.81	-6.162	-1.349
1	1	A_G1:C16_B	0.055	-0.09	0.03	6.59	-9.227	-0.866
1	3	A_G3:C14_B	0.084	-0.092	-0.019	5.364	-7.491	0.791
1	4	A_G4:U13_B	-1.791	-0.406	-0.005	-0.782	-9.071	-6.416
1	5	A_U5:G12_B	1.789	-0.412	-0.018	1.44	-9.256	-6.654
1	7	A_U7:A10_B	0.074	-0.009	0.234	-8.09	0.599	0.006

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.