A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PH0018  PDB ID: 1H38 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13E_DA4:DT7_G0.355-0.3761.3012.19-18.97214.622
14E_DA5:DT6_G0.124-0.130.854-12.299-12.8982.808
18E_DA9:DT2_G-0.172-0.51-1.427-8.75-16.53223.25
19E_DA11:U8_F0.016-0.19-0.05-10.51211.096.061
16E_DC7:DG4_G0.414-0.1570.0085.427-21.572-2.257
111E_DC13:G6_F0.095-0.1910.1364.632-4.4962.771
113E_DC15:G4_F0.345-0.217-0.0659.093-3.5250.514
114E_DC16:G3_F-0.0210.026-0.22311.946-8.524.038
116E_DC18:G1_F-0.092-0.195-0.457.298-10.849-3.421
11E_DG2:DC9_G0.3910.039-0.5153.4226.685-2.756
12E_DG3:DC8_G-0.051-0.0340.898-4.285-15.6121.885
17E_DG8:DC3_G-0.327-0.434-1.179-12.406-11.6340.845
112E_DG14:C5_F-0.192-0.3420.0499.211-0.543-0.868
115E_DG17:C2_F-0.236-0.339-0.336-3.755-8.1270.366
15E_DT6:DA5_G-0.201-0.0510.493-9.006-6.40512.899
110E_DT12:A7_F0.009-0.262-0.0812.395-11.4932.896
119H_DA4:DT7_J0.264-0.1040.3742.408-22.333.219
120H_DA5:DT6_J-0.250.1830.0565.799-22.466-2.835
124H_DA9:DT2_J-0.29-0.1690.28730.442-4.379-4.28
125H_DA11:U8_I0.041-0.142-0.129-12.449.216.27
122H_DC7:DG4_J-0.222-0.197-0.0229.8981.446-5.09
127H_DC13:G6_I0.076-0.1770.1626.868-2.5523.442
129H_DC15:G4_I0.357-0.192-0.0419.725-3.0490.316
130H_DC16:G3_I-0.0070.0250.1337.969-8.8254.713
132H_DC18:G1_I-0.096-0.207-0.4867.649-11.084-3.451
117H_DG2:DC9_J-0.022-0.0560.36624.16-7.561.772
118H_DG3:DC8_J-0.3470.0480.22618.444-24.1394.778
123H_DG8:DC3_J0.0620.2250.11113.459-3.1452.491
128H_DG14:C5_I-0.178-0.3260.1519.206-2.7640.321
131H_DG17:C2_I-0.256-0.328-0.317-3.776-6.8850.6
121H_DT6:DA5_J-0.307-0.13-0.0568.744-0.692-0.094
126H_DT12:A7_I0.054-0.259-0.1523.07-9.363.371
135K_DA4:DT7_M0.148-0.034-0.5-8.223-3.2366.75
136K_DA5:DT6_M0.0580.18-0.51-4.195-4.6433.505
140K_DA9:DT2_M0.3470.1961.24840.697-0.324-13.58
141K_DA11:U8_L0.018-0.088-0.075-14.56812.0897.209
138K_DC7:DG4_M-0.207-0.372-0.82113.722-1.293-3.116
143K_DC13:G6_L0.07-0.1450.0566.042-5.3514.137
145K_DC15:G4_L0.352-0.206-0.0599.651-5.1390.078
146K_DC16:G3_L-0.0020.023-0.08710.459-7.8093.94
148K_DC18:G1_L-0.086-0.211-0.4298.046-10.035-3.399
133K_DG2:DC9_M-0.2230.265-0.419.352-2.0790.013
134K_DG3:DC8_M-0.385-0.269-0.137-10.163-8.195-1.147
139K_DG8:DC3_M-0.281-0.250.32410.301-2.057-0.601
144K_DG14:C5_L-0.167-0.3190.0539.281-1.9660.23
147K_DG17:C2_L-0.234-0.36-0.324-2.853-8.3350.116
137K_DT6:DA5_M-0.201-0.258-1.31425.532-7.7032.824
142K_DT12:A7_L0.012-0.24-0.1072.833-9.5982.186
151N_DA4:DT7_P0.064-0.0580.182-6.056-24.3524.04
152N_DA5:DT6_P-0.443-0.0150.304-2.174-22.1-0.155
156N_DA9:DT2_P-0.154-0.1040.78736.8891.092-3.415
157N_DA11:U8_O0.008-0.149-0.036-10.45611.1086.606
154N_DC7:DG4_P0.134-0.299-0.4288.285-12.8170.255
159N_DC13:G6_O0.106-0.1630.0267.336-2.9993.638
161N_DC15:G4_O0.37-0.18-0.10411.097-3.7430.934
162N_DC16:G3_O0.0310.038-0.08211.517-8.1244.307
164N_DC18:G1_O-0.078-0.198-0.437.557-10.188-3.452
149N_DG2:DC9_P0.01-0.0890.87239.705-8.243-0.565
150N_DG3:DC8_P0.360.0260.84926.727-10.253-1.112
155N_DG8:DC3_P-0.3680.2440.58414.5265.481-0.845
160N_DG14:C5_O-0.166-0.3050.10711.227-3.183-0.096
163N_DG17:C2_O-0.249-0.329-0.333-3.219-8.0550.427
153N_DT6:DA5_P-0.181-0.105-0.067-6.3666.60412.165
158N_DT12:A7_O0.009-0.28-0.2654.003-8.2352.645

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.