1H4Q: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0056 PDB ID: 1H4Q

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	10	T_5MU54:G58_T	3.695	-1.961	0.308	-2.903	7.508	-99.191
1	3	T_A6:U67_T	-0.131	-0.223	0.327	-3.268	-1.975	2.304
1	23	T_A14:U8_T	-3.677	-1.906	0.161	0.287	8.339	-95.365
1	12	T_A38:U32_T	-0.278	-0.196	-0.168	-14.781	-13.222	3.314
1	15	T_A41:U29_T	-0.025	-0.118	0.559	16.367	-6.11	-1.936
1	20	T_C11:G24_T	-0.144	-0.319	0.084	-7.056	-5.791	1.245
1	22	T_C13:G22_T	0.161	-0.266	0.337	-0.221	-10.216	1.479
1	13	T_C39:G31_T	0.453	-0.302	0.28	-6.586	-4.029	2.826
1	6	T_C50:G64_T	0.114	-0.094	0.432	-3.827	-13.558	2.357
1	1	T_G4:C69_T	-0.026	-0.127	-0.182	-4.767	-13.855	-2.34
1	2	T_G5:C68_T	-0.127	-0.145	-0.384	-5.856	-7.248	-2.932
1	4	T_G7:C66_T	-0.118	-0.068	0.361	-3.59	-1.839	1.872
1	19	T_G10:C25_T	-0.412	-0.282	-0.238	-2.845	-2.374	6.088
1	21	T_G12:C23_T	-0.234	-0.289	-0.129	-8.313	-14.295	2.36
1	24	T_G15:C48_T	0.255	3.754	0.171	3.169	2.757	157.355
1	25	T_G19:C56_T	-0.279	-0.045	-0.044	-32.195	-29.055	4.389
1	14	T_G40:C30_T	-0.122	-0.283	0.198	3.727	0.27	0.561
1	16	T_G42:C28_T	-0.508	0.02	0.237	0.405	-14.528	2.61
1	17	T_G43:C27_T	-0.463	-0.088	-0.225	-27.878	-24.407	0.863
1	18	T_G44:A26_T	-0.255	1.59	0.149	-39.152	-21.359	-17.814
1	5	T_G49:U65_T	-1.972	-0.428	-0.038	3.743	-7.571	0.287
1	8	T_G52:C62_T	-1.144	-0.891	0.216	1.465	-8.047	-7.713
1	9	T_G53:C61_T	0.09	-0.374	0.144	-10.855	-13.029	-0.268
1	11	T_PSU55:G18_T	0.337	-5.51	0.191	11.706	6.614	-101.559
1	7	T_U51:A63_T	-0.034	-0.327	0.156	1.967	-7.129	-0.253

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.