A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0056  PDB ID: 1H4Q 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
110T_5MU54:G58_T3.695-1.9610.308-2.9037.508-99.191
13T_A6:U67_T-0.131-0.2230.327-3.268-1.9752.304
123T_A14:U8_T-3.677-1.9060.1610.2878.339-95.365
112T_A38:U32_T-0.278-0.196-0.168-14.781-13.2223.314
115T_A41:U29_T-0.025-0.1180.55916.367-6.11-1.936
120T_C11:G24_T-0.144-0.3190.084-7.056-5.7911.245
122T_C13:G22_T0.161-0.2660.337-0.221-10.2161.479
113T_C39:G31_T0.453-0.3020.28-6.586-4.0292.826
16T_C50:G64_T0.114-0.0940.432-3.827-13.5582.357
11T_G4:C69_T-0.026-0.127-0.182-4.767-13.855-2.34
12T_G5:C68_T-0.127-0.145-0.384-5.856-7.248-2.932
14T_G7:C66_T-0.118-0.0680.361-3.59-1.8391.872
119T_G10:C25_T-0.412-0.282-0.238-2.845-2.3746.088
121T_G12:C23_T-0.234-0.289-0.129-8.313-14.2952.36
124T_G15:C48_T0.2553.7540.1713.1692.757157.355
125T_G19:C56_T-0.279-0.045-0.044-32.195-29.0554.389
114T_G40:C30_T-0.122-0.2830.1983.7270.270.561
116T_G42:C28_T-0.5080.020.2370.405-14.5282.61
117T_G43:C27_T-0.463-0.088-0.225-27.878-24.4070.863
118T_G44:A26_T-0.2551.590.149-39.152-21.359-17.814
15T_G49:U65_T-1.972-0.428-0.0383.743-7.5710.287
18T_G52:C62_T-1.144-0.8910.2161.465-8.047-7.713
19T_G53:C61_T0.09-0.3740.144-10.855-13.029-0.268
111T_PSU55:G18_T0.337-5.510.19111.7066.614-101.559
17T_U51:A63_T-0.034-0.3270.1561.967-7.129-0.253

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.