1H4Q: Base Pair Morphology Step Parameters

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NDB ID: PR0056 PDB ID: 1H4Q

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	10	TT_5MU54PSU55:G18G58_TT	1.924	-1.935	3.31	12.525	-2.49	43.428	-2.271	-1.262	3.797	-3.281	-16.506	45.18
1	3	TT_A6G7:C66U67_TT	-0.195	-2.227	3.104	0.528	6.955	31.037	-5.18	0.441	2.554	12.795	-0.972	31.792
1	22	TT_A14G15:C48U8_TT	1.863	-3.476	3.171	1.932	5.688	-67.323	2.907	1.75	3.372	-5.121	1.74	-67.559
1	11	TT_A38C39:G31U32_TT	-0.736	-1.523	3.107	-3.858	-1.138	35.291	-2.336	0.66	3.213	-1.869	6.338	35.513
1	14	TT_A41G42:C28U29_TT	1.034	-2.18	3.55	3.941	8.041	28.613	-5.908	-1.171	2.954	15.789	-7.737	29.954
1	19	TT_C11G12:C23G24_TT	0.449	-1.372	3.255	4.639	8.293	35.567	-3.257	-0.106	2.907	13.286	-7.432	36.775
1	21	TT_C13A14:U8G22_TT	-1.288	-0.259	3.286	4.857	-2.859	61.321	-0.12	1.484	3.193	-2.797	-4.751	61.554
1	12	TT_C39G40:C30G31_TT	-0.481	-1.346	2.945	-0.418	8.356	26.216	-4.556	0.925	2.415	17.853	0.893	27.496
1	6	TT_C50U51:A63G64_TT	-0.828	-2.15	2.96	-1.381	4.927	26.988	-5.565	1.455	2.572	10.438	2.925	27.46
1	1	TT_G4G5:C68C69_TT	-0.066	-2.03	3.485	1.034	5.722	22.17	-7.115	0.529	2.87	14.562	-2.631	22.91
1	2	TT_G5A6:U67C68_TT	1.058	-1.577	3.099	-4.534	7.121	32.076	-3.814	-2.522	2.531	12.616	8.033	33.141
1	4	TT_G7G49:U65C66_TT	-0.058	-2.447	2.939	2.161	5.568	25.825	-6.548	0.596	2.356	12.25	-4.754	26.495
1	18	TT_G10C11:G24C25_TT	-0.732	-1.646	3.215	-4.534	6.218	33.634	-3.697	0.564	2.944	10.574	7.711	34.478
1	20	TT_G12C13:G22C23_TT	1.219	-2.025	3.012	2.597	2.528	27.373	-4.803	-1.979	2.918	5.313	-5.457	27.607
1	13	TT_G40A41:U29C30_TT	0.092	-1.204	2.993	-1.317	2.623	29.941	-2.803	-0.419	2.873	5.062	2.541	30.081
1	15	TT_G42G43:C27C28_TT	1.176	-2.383	3.827	10.648	15.82	33.147	-5.803	-0.353	2.702	25.296	-17.026	38.107
1	16	TT_G43G44:A26C27_TT	-1.138	-1.731	3.223	-0.52	8.313	39.972	-3.341	1.578	2.836	12.003	0.751	40.796
1	17	TT_G44G10:C25A26_TT	-3.467	-2.694	2.882	18.013	7.121	65.778	-2.594	3.578	1.728	6.415	-16.225	68.262
1	5	TT_G49C50:G64U65_TT	0.027	-1.277	3.374	-3.564	-0.683	44.219	-1.626	-0.378	3.381	-0.905	4.726	44.36
1	8	TT_G52G53:C61C62_TT	1.084	-1.885	3.494	3.666	5.752	41.142	-3.284	-1.12	3.293	8.117	-5.174	41.679
1	9	TT_G535MU54:G58C61_TT	-2.709	-2.141	3.214	1.143	-0.703	87.079	-1.539	1.991	3.2	-0.511	-0.829	87.087
1	7	TT_U51G52:C62A63_TT	0.33	-2.118	3.151	-2.019	3.504	21.179	-6.936	-1.616	2.725	9.422	5.431	21.558

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.