A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: PD0289  PDB ID: 1H89 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11D_DA2:DT26_E0.021-0.135-0.01-2.905-6.772-0.707
110D_DA11:DT17_E0.054-0.215-0.071-0.166-5.461.307
111D_DA12:DT16_E0.043-0.162-0.338-1.803-10.048-2.762
117D_DA18:DT10_E-0.029-0.1080.077-2.202-6.1482.933
118D_DA19:DT9_E0.107-0.0870.1622.599-4.943-0.03
122D_DA23:DT5_E0.2-0.149-0.0342.923-7.1232.149
17D_DC8:DG20_E0.023-0.063-0.021.798-1.907-0.877
19D_DC10:DG18_E0.004-0.091-0.012-1.348-5.205-1.763
113D_DC14:DG14_E0.131-0.062-0.121-2.967-12.1071.759
114D_DC15:DG13_E0.034-0.0570.229-14.595-1.089-0.408
119D_DC20:DG8_E0.156-0.1170.091-0.147-10.407-0.191
123D_DC24:DG4_E0.061-0.135-0.3292.586-10.252.513
13D_DG4:DC24_E-0.27-0.068-0.338-18.885-1.4910.829
15D_DG6:DC22_E-0.094-0.015-0.023-0.905-10.4931.513
16D_DG7:DC21_E-0.133-0.0740.06-0.771-4.73-2.185
18D_DG9:DC19_E0.008-0.133-0.0265.749-0.26-3.964
120D_DG21:DC7_E-0.172-0.162-0.161-0.373-0.0790.128
121D_DG22:DC6_E-0.173-0.269-0.1233.865-7.5721.118
125D_DG26:DC2_E0.077-0.227-0.0993.02-4.461-1.022
12D_DT3:DA25_E-0.094-0.0320.03-2.219-13.2471.816
14D_DT5:DA23_E-0.065-0.1580.166-5.999-5.1050.926
112D_DT13:DA15_E0.046-0.223-0.1073.705-11.8172.26
115D_DT16:DA12_E-0.204-0.164-0.009-5.513-6.8811.334
116D_DT17:DA11_E-0.019-0.0840.129-1.481-12.686-4.339
124D_DT25:DA3_E-0.284-0.073-0.120.658-10.493-1.07

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.