A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PD0232  PDB ID: 1H9T 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12X_DA2:DT18_Y0.525-0.313-0.231.212-14.8353.038
19X_DA9:DT11_Y-0.615-0.647-0.378-12.348-11.575-2.418
112X_DA12:DT8_Y-0.0120.5220.20210.9235.7037.993
115X_DA15:DT5_Y0.822-0.28-0.662-6.952-3.927-1.74
117X_DA17:DT3_Y-0.426-0.14-0.196-10.254-12.0514.527
11X_DC1:DG19_Y-0.405-0.0830.75-2.652-8.1261.262
14X_DC4:DG16_Y-0.134-0.038-0.1848.433-9.28-1.746
110X_DC10:DG10_Y-0.741-0.294-0.6080.767-3.1614.413
113X_DC13:DG7_Y0.76-0.263-0.08415.721-7.46.936
114X_DC14:DG6_Y0.177-0.1090.1680.288-4.812-2.008
119X_DC19:DG1_Y-1.544-0.038-0.3281.063-11.701-1.813
16X_DG6:DC14_Y-0.113-0.1090.109-1.55-0.9611.393
17X_DG7:DC13_Y-0.679-0.271-0.236-15.24-5.9573.041
111X_DG11:DC9_Y0.871-0.2590.06516.205-6.4944.253
116X_DG16:DC4_Y-0.1910.164-0.258-10.835-13.341.269
13X_DT3:DA17_Y0.478-0.0370.0639.239-15.64.994
15X_DT5:DA15_Y-0.619-0.296-0.2783.9130.174-0.33
18X_DT8:DA12_Y-0.1130.420.038-4.2695.0476.849
118X_DT18:DA2_Y-0.526-0.2820.028-1.359-16.1254.467

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.