1H9T: Base Pair Morphology Parameters

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NDB ID: PD0232 PDB ID: 1H9T

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	X_DA2:DT18_Y	0.525	-0.313	-0.23	1.212	-14.835	3.038
1	9	X_DA9:DT11_Y	-0.615	-0.647	-0.378	-12.348	-11.575	-2.418
1	12	X_DA12:DT8_Y	-0.012	0.522	0.202	10.923	5.703	7.993
1	15	X_DA15:DT5_Y	0.822	-0.28	-0.662	-6.952	-3.927	-1.74
1	17	X_DA17:DT3_Y	-0.426	-0.14	-0.196	-10.254	-12.051	4.527
1	1	X_DC1:DG19_Y	-0.405	-0.083	0.75	-2.652	-8.126	1.262
1	4	X_DC4:DG16_Y	-0.134	-0.038	-0.184	8.433	-9.28	-1.746
1	10	X_DC10:DG10_Y	-0.741	-0.294	-0.608	0.767	-3.161	4.413
1	13	X_DC13:DG7_Y	0.76	-0.263	-0.084	15.721	-7.4	6.936
1	14	X_DC14:DG6_Y	0.177	-0.109	0.168	0.288	-4.812	-2.008
1	19	X_DC19:DG1_Y	-1.544	-0.038	-0.328	1.063	-11.701	-1.813
1	6	X_DG6:DC14_Y	-0.113	-0.109	0.109	-1.55	-0.961	1.393
1	7	X_DG7:DC13_Y	-0.679	-0.271	-0.236	-15.24	-5.957	3.041
1	11	X_DG11:DC9_Y	0.871	-0.259	0.065	16.205	-6.494	4.253
1	16	X_DG16:DC4_Y	-0.191	0.164	-0.258	-10.835	-13.34	1.269
1	3	X_DT3:DA17_Y	0.478	-0.037	0.063	9.239	-15.6	4.994
1	5	X_DT5:DA15_Y	-0.619	-0.296	-0.278	3.913	0.174	-0.33
1	8	X_DT8:DA12_Y	-0.113	0.42	0.038	-4.269	5.047	6.849
1	18	X_DT18:DA2_Y	-0.526	-0.282	0.028	-1.359	-16.125	4.467

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.