1H9T: Base Pair Morphology Step Parameters

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NDB ID: PD0232 PDB ID: 1H9T

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	XX_DA2DT3:DA17DT18_YY	0.674	-0.695	3.015	-0.712	8.16	23.638	-3.755	-1.744	2.61	19.195	1.675	24.997
1	9	XX_DA9DC10:DG10DT11_YY	0.231	0.065	3.166	4.614	-0.253	26.464	0.203	0.659	3.159	-0.548	-9.982	26.858
1	12	XX_DA12DC13:DG7DT8_YY	0.308	-1.327	3.296	3.315	-2.415	31.789	-1.956	0.055	3.398	-4.386	-6.02	32.046
1	15	XX_DA15DG16:DC4DT5_YY	-0.864	-0.569	3.31	-9.842	10.413	29.379	-2.876	-0.222	3.067	19.162	18.111	32.618
1	17	XX_DA17DT18:DA2DT3_YY	-0.561	-0.637	2.995	-1.471	7.844	23.444	-3.608	0.912	2.673	18.626	3.492	24.747
1	1	XX_DC1DA2:DT18DG19_YY	-0.454	0.595	3.341	9.462	-1.294	42.613	0.925	1.525	3.157	-1.755	-12.828	43.621
1	4	XX_DC4DT5:DA15DG16_YY	1.027	-0.729	3.314	7.988	9.825	31.858	-2.821	-0.459	3.121	17.08	-13.887	34.221
1	10	XX_DC10DG11:DC9DG10_YY	0.274	0.617	3.14	-4.32	11.239	37.081	-0.417	-0.928	3.139	17.127	6.584	38.922
1	13	XX_DC13DC14:DG6DG7_YY	-0.546	-1.127	3.539	-2.667	-0.822	37.811	-1.62	0.468	3.591	-1.266	4.108	37.91
1	14	XX_DC14DA15:DT5DG6_YY	-0.205	-0.859	3.564	4.542	6.654	35.521	-2.36	1.0	3.304	10.737	-7.329	36.394
1	6	XX_DG6DG7:DC13DC14_YY	0.082	-1.225	3.622	2.017	-1.866	37.015	-1.646	0.172	3.677	-2.935	-3.172	37.114
1	7	XX_DG7DT8:DA12DC13_YY	-0.156	-1.351	3.051	-1.881	-2.763	31.498	-1.99	-0.045	3.159	-5.071	3.453	31.67
1	11	XX_DG11DA12:DT8DC9_YY	-0.233	-0.79	3.379	-2.127	3.191	29.601	-2.212	0.0	3.286	6.212	4.141	29.843
1	16	XX_DG16DA17:DT3DC4_YY	0.177	-0.226	3.05	0.894	-3.383	39.667	0.035	-0.162	3.061	-4.973	-1.314	39.815
1	3	XX_DT3DC4:DG16DA17_YY	-0.322	-0.233	3.039	-1.85	-4.204	37.818	0.141	0.274	3.059	-6.457	2.841	38.086
1	5	XX_DT5DG6:DC14DA15_YY	0.196	-0.825	3.36	-2.284	7.159	35.303	-2.348	-0.64	3.121	11.641	3.714	36.069
1	8	XX_DT8DA9:DT11DA12_YY	-0.353	-0.335	3.421	1.945	6.198	32.099	-1.701	0.973	3.274	11.068	-3.474	32.733
1	18	XX_DT18DC19:DG1DA2_YY	-0.003	0.559	3.295	-1.102	8.908	29.934	-0.709	-0.211	3.318	16.777	2.076	31.221

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.