1HC8: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0159 PDB ID: 1HC8

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_A104:U155_C	-0.245	0.063	0.145	-0.042	1.25	3.841
1	13	C_A107:U131_C	0.51	-0.22	-0.156	6.915	-22.759	0.363
1	12	C_A136:U132_C	0.231	1.135	0.038	10.424	-7.41	174.5
1	8	C_A140:U151_C	-0.434	-0.143	-0.439	-19.227	-0.914	7.149
1	2	C_C102:G157_C	0.264	-0.071	0.528	-0.145	-17.423	4.28
1	3	C_C103:G156_C	0.19	-0.29	-0.331	0.158	-6.958	-0.49
1	19	C_C114:G124_C	0.129	-0.062	-0.031	-1.275	-19.118	5.368
1	10	C_C142:G149_C	0.578	-0.392	-0.361	4.661	1.289	-3.775
1	5	C_G105:C154_C	-0.312	0.074	-0.355	-6.877	-14.412	4.609
1	6	C_G106:A153_C	6.69	-4.256	-0.086	-11.947	-12.18	-7.499
1	15	C_G109:C129_C	-0.071	-0.122	0.357	0.112	3.163	-2.541
1	17	C_G112:C126_C	-0.381	-0.075	0.418	8.631	-5.198	-10.18
1	18	C_G113:C125_C	-0.574	-0.052	0.403	3.214	-15.253	4.187
1	7	C_G137:C152_C	0.443	0.024	-0.253	-2.857	-3.826	3.582
1	9	C_G141:C150_C	-0.329	-0.121	-0.313	-7.898	2.587	3.396
1	11	C_G143:A148_C	6.643	-4.073	-0.475	-5.169	7.505	-4.481
1	1	C_GTP101:U158_C	-2.354	-0.581	0.175	-7.297	-10.846	-3.42
1	14	C_U108:A130_C	-0.241	-0.26	-0.281	-4.422	-10.441	1.783
1	16	C_U110:A138_C	-1.091	3.815	0.447	-8.518	5.715	-69.657
1	20	C_U115:A123_C	5.148	-0.961	0.061	-12.668	-9.566	-2.534
1	24	D_A304:U355_D	0.115	0.077	0.225	-2.424	-4.175	6.201
1	33	D_A307:U331_D	0.179	-0.11	0.242	8.86	-17.53	-0.199
1	32	D_A336:U332_D	0.134	1.453	-0.206	10.295	-4.364	175.896
1	28	D_A340:U351_D	-0.414	-0.309	-0.306	-11.608	-2.723	5.131
1	22	D_C302:G357_D	0.658	-0.423	0.086	2.328	-16.912	-1.358
1	23	D_C303:G356_D	-0.068	-0.155	-0.054	-4.621	-11.515	-1.394
1	39	D_C314:G324_D	0.465	-0.143	0.114	-1.497	-26.426	6.579
1	30	D_C342:G349_D	0.469	-0.189	-0.57	7.777	2.29	-0.382
1	25	D_G305:C354_D	-0.303	-0.063	0.098	0.513	-7.318	1.416
1	26	D_G306:A353_D	6.917	-4.19	0.015	-15.121	-8.872	-4.142
1	35	D_G309:C329_D	0.127	-0.051	0.216	-2.043	-6.095	-0.188
1	37	D_G312:C326_D	-0.011	-0.101	0.642	10.33	-1.456	-9.417
1	38	D_G313:C325_D	-0.039	-0.121	-0.01	0.405	-24.136	4.083
1	27	D_G337:C352_D	0.084	-0.056	-0.326	-3.986	-4.681	1.929
1	29	D_G341:C350_D	0.071	-0.197	-0.504	-1.938	8.903	-0.164
1	31	D_G343:A348_D	6.862	-4.023	-0.088	-6.194	3.361	-7.208
1	21	D_GTP301:U358_D	-2.404	-0.727	0.334	-2.723	-7.871	-3.363
1	34	D_U308:A330_D	0.265	-0.231	0.018	-10.589	-13.147	-4.158
1	36	D_U310:A338_D	-0.755	3.841	0.848	-8.468	9.232	-66.401
1	40	D_U315:A323_D	5.554	-1.163	0.114	-10.167	-9.525	2.556

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.