A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: PR0159  PDB ID: 1HC8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_A104:U155_C-0.2450.0630.145-0.0421.253.841
113C_A107:U131_C0.51-0.22-0.1566.915-22.7590.363
112C_A136:U132_C0.2311.1350.03810.424-7.41174.5
18C_A140:U151_C-0.434-0.143-0.439-19.227-0.9147.149
12C_C102:G157_C0.264-0.0710.528-0.145-17.4234.28
13C_C103:G156_C0.19-0.29-0.3310.158-6.958-0.49
119C_C114:G124_C0.129-0.062-0.031-1.275-19.1185.368
110C_C142:G149_C0.578-0.392-0.3614.6611.289-3.775
15C_G105:C154_C-0.3120.074-0.355-6.877-14.4124.609
16C_G106:A153_C6.69-4.256-0.086-11.947-12.18-7.499
115C_G109:C129_C-0.071-0.1220.3570.1123.163-2.541
117C_G112:C126_C-0.381-0.0750.4188.631-5.198-10.18
118C_G113:C125_C-0.574-0.0520.4033.214-15.2534.187
17C_G137:C152_C0.4430.024-0.253-2.857-3.8263.582
19C_G141:C150_C-0.329-0.121-0.313-7.8982.5873.396
111C_G143:A148_C6.643-4.073-0.475-5.1697.505-4.481
11C_GTP101:U158_C-2.354-0.5810.175-7.297-10.846-3.42
114C_U108:A130_C-0.241-0.26-0.281-4.422-10.4411.783
116C_U110:A138_C-1.0913.8150.447-8.5185.715-69.657
120C_U115:A123_C5.148-0.9610.061-12.668-9.566-2.534
124D_A304:U355_D0.1150.0770.225-2.424-4.1756.201
133D_A307:U331_D0.179-0.110.2428.86-17.53-0.199
132D_A336:U332_D0.1341.453-0.20610.295-4.364175.896
128D_A340:U351_D-0.414-0.309-0.306-11.608-2.7235.131
122D_C302:G357_D0.658-0.4230.0862.328-16.912-1.358
123D_C303:G356_D-0.068-0.155-0.054-4.621-11.515-1.394
139D_C314:G324_D0.465-0.1430.114-1.497-26.4266.579
130D_C342:G349_D0.469-0.189-0.577.7772.29-0.382
125D_G305:C354_D-0.303-0.0630.0980.513-7.3181.416
126D_G306:A353_D6.917-4.190.015-15.121-8.872-4.142
135D_G309:C329_D0.127-0.0510.216-2.043-6.095-0.188
137D_G312:C326_D-0.011-0.1010.64210.33-1.456-9.417
138D_G313:C325_D-0.039-0.121-0.010.405-24.1364.083
127D_G337:C352_D0.084-0.056-0.326-3.986-4.6811.929
129D_G341:C350_D0.071-0.197-0.504-1.9388.903-0.164
131D_G343:A348_D6.862-4.023-0.088-6.1943.361-7.208
121D_GTP301:U358_D-2.404-0.7270.334-2.723-7.871-3.363
134D_U308:A330_D0.265-0.2310.018-10.589-13.147-4.158
136D_U310:A338_D-0.7553.8410.848-8.4689.232-66.401
140D_U315:A323_D5.554-1.1630.114-10.167-9.5252.556

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.