1HC8: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0159 PDB ID: 1HC8

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	CC_A104G105:C154U155_CC	0.659	-1.957	3.484	5.044	13.822	27.17	-6.232	-0.31	2.323	27.051	-9.872	30.832
1	12	CC_A107U108:A130U131_CC	-0.411	-1.918	3.362	-1.993	7.568	35.164	-4.15	0.389	2.918	12.338	3.25	35.997
1	11	CC_A136A107:U131U132_CC	-2.663	-2.479	1.081	83.983	-149.791	138.09	-1.047	1.44	1.317	-75.133	-42.125	177.044
1	8	CC_A140G141:C150U151_CC	-0.753	-2.48	3.144	0.689	-0.291	23.679	-5.948	2.055	3.151	-0.71	-1.678	23.69
1	2	CC_C102C103:G156G157_CC	-0.585	-1.817	3.051	4.312	8.88	31.826	-4.431	1.633	2.375	15.727	-7.637	33.284
1	3	CC_C103A104:U155G156_CC	0.733	-1.809	3.295	-2.772	4.892	27.166	-4.894	-2.165	2.844	10.276	5.822	27.731
1	17	CC_C114U115:A123G124_CC	0.29	-0.859	3.575	5.188	5.926	51.22	-1.416	0.047	3.475	6.808	-5.961	51.782
1	10	CC_C142G143:A148G149_CC	0.25	-1.731	3.676	2.895	1.847	54.862	-1.998	-0.079	3.629	2.002	-3.139	54.961
1	5	CC_G105G106:A153C154_CC	-0.418	-0.809	3.706	4.057	11.676	68.976	-1.17	0.526	3.522	10.227	-3.554	69.94
1	6	CC_G106G137:C152A153_CC	-3.092	1.373	3.234	10.346	1.567	42.954	1.696	4.978	2.507	2.102	-13.883	44.152
1	14	CC_G109U110:A138C129_CC	-3.178	-0.164	-2.003	22.173	169.386	152.004	0.166	1.557	-2.083	84.827	-11.104	177.784
1	15	CC_G112G113:C125C126_CC	0.496	-1.617	3.211	-1.387	5.279	35.321	-3.354	-0.997	2.926	8.636	2.269	35.727
1	16	CC_G113C114:G124C125_CC	0.832	-2.02	3.322	7.036	2.074	34.875	-3.612	-0.313	3.301	3.414	-11.581	35.614
1	7	CC_G137A140:U151C152_CC	-1.981	-2.639	3.802	2.434	3.629	43.993	-3.886	2.887	3.476	4.83	-3.239	44.198
1	9	CC_G141C142:G149C150_CC	-0.322	-2.096	3.046	1.129	0.282	33.731	-3.653	0.724	3.017	0.486	-1.945	33.75
1	1	CC_GTP101C102:G157U158_CC	-0.076	-1.311	3.024	-2.637	3.241	42.2	-2.114	-0.14	2.919	4.489	3.651	42.397
1	13	CC_U108G109:C129A130_CC	-1.099	-2.005	3.265	-2.637	7.16	28.621	-5.349	1.627	2.78	14.168	5.218	29.6
1	21	DD_A304G305:C354U355_DD	0.506	-1.977	3.221	1.199	7.954	25.644	-6.098	-0.811	2.524	17.384	-2.621	26.856
1	29	DD_A307U308:A330U331_DD	-0.762	-2.348	3.435	-1.866	10.887	40.431	-4.388	0.878	2.77	15.408	2.64	41.852
1	28	DD_A336A307:U331U332_DD	-2.688	-1.772	1.479	83.31	-150.942	171.258	-0.837	1.371	1.493	-75.481	-41.661	179.422
1	25	DD_A340G341:C350U351_DD	-0.775	-2.603	3.07	1.562	2.778	23.995	-6.99	2.288	2.7	6.644	-3.737	24.203
1	19	DD_C302C303:G356G357_DD	-0.477	-1.931	3.236	-0.706	11.967	28.932	-5.575	0.768	2.287	22.758	1.343	31.269
1	20	DD_C303A304:U355G356_DD	0.688	-1.828	3.143	-0.78	7.492	29.675	-4.785	-1.442	2.596	14.34	1.493	30.595
1	34	DD_C314U315:A323G324_DD	0.017	-0.961	3.525	6.621	8.245	51.041	-1.677	0.448	3.321	9.452	-7.591	52.053
1	27	DD_C342G343:A348G349_DD	-0.171	-1.817	3.803	4.014	8.033	56.164	-2.412	0.431	3.516	8.472	-4.233	56.82
1	22	DD_G305G306:A353C354_DD	-0.266	-0.93	3.914	7.427	13.304	69.573	-1.34	0.53	3.668	11.52	-6.431	71.016
1	23	DD_G306G337:C352A353_DD	-3.428	1.198	3.139	10.347	1.19	42.067	1.526	5.502	2.304	1.628	-14.155	43.28
1	31	DD_G309U310:A338C329_DD	2.854	-1.179	-2.027	-26.645	-168.013	-155.977	0.374	1.461	-2.131	84.113	-13.34	-177.945
1	32	DD_G312G313:C325C326_DD	0.276	-1.68	3.565	2.695	7.608	34.667	-3.904	-0.043	3.15	12.558	-4.448	35.566
1	33	DD_G313C314:G324C325_DD	0.859	-1.776	3.187	2.257	2.436	35.488	-3.243	-1.088	3.109	3.986	-3.693	35.638
1	24	DD_G337A340:U351C352_DD	-1.835	-2.712	3.551	2.052	3.316	45.48	-3.799	2.553	3.275	4.28	-2.649	45.639
1	26	DD_G341C342:G349C350_DD	0.075	-2.246	3.151	0.199	-1.562	32.59	-3.732	-0.099	3.253	-2.782	-0.354	32.627
1	18	DD_GTP301C302:G357U358_DD	-0.228	-1.397	3.16	0.64	5.008	46.325	-2.162	0.339	2.998	6.344	-0.811	46.585
1	30	DD_U308G309:C329A330_DD	-1.25	-1.786	3.114	0.43	5.283	25.501	-5.259	2.881	2.674	11.805	-0.962	26.037

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.